PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8482105.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 283aa    MW: 31632.5 Da    PI: 7.9794
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8482105.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.2e-161462148
                               TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                               rg+W++eEd  l+++ +++G+  +W t + + g++R++k+c++rw++yl
  Rmu_co8482105.1_g000001.1 14 RGPWSPEEDATLKNYLHEHGTTgNWITLPTKAGLNRCGKSCRLRWLNYL 62
                               89*******************9*************************97 PP
2Myb_DNA-binding29.22.2e-0968121146
                                TSSS-HHHHHHHHHHHHHTTTT.........-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.........tWktIartmgkgRtlkqcksrwqk 46 
                                rg +T+ Ed  +  +++  G++          W+ Ia+ ++ gRt++++k++w++
  Rmu_co8482105.1_g000001.1  68 RGTFTEIEDNVICTLFRSIGSRqvndygthiWWSVIASQLP-GRTDNDVKNYWNT 121
                                78899999999999999999999999999999*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    
MGRAPCCDKS KVKRGPWSPE EDATLKNYLH EHGTTGNWIT LPTKAGLNRC GKSCRLRWLN  60
YLRPDIKRGT FTEIEDNVIC TLFRSIGSRQ VNDYGTHIWW SVIASQLPGR TDNDVKNYWN  120
TKLKKKLLAV AARNNIVAAR RTCDHNIADQ FSAPVPPKIE TPHGPKTSSC LGGTLPYAAN  180
ISLVHSFDQP KQTFEPWCNH SDSKPMEVSD FGSTSESNSF SIPLSHQEVS RLPSSSSLAQ  240
LDQYHCSLWS GHEGINYVNS EFLMDFGFET PSADQFLLGG FGH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-58MYB family protein