PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co8449019.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 414aa MW: 45651.3 Da PI: 7.2062

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co8449019.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.9	9.8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+ +++++G g+W++ +++ g+ R++k+c++rw +yl Rmu_co8449019.1_g000001.1 14 KGPWTPEEDQKLLSYIQEHGHGSWRALPAKAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	53	8e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l Rmu_co8449019.1_g000001.1 67 RGKFSLQEEQTIIQLHALLGNR-WSAIANHLP-KRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence
MGRSPCCEKV GLKKGPWTPE EDQKLLSYIQ EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY 60 LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIANHLPKRT DNEIKNYWNT HLKKRLTKMG 120 IDPATHKPKH HEAYGSGSGH AKDAANLSHM AQWESARLEA EARLVRESKQ LIMTNHPLQF 180 QHHQLVNISP STQTHGLLMS KASAATSALP CLDVLKAWQG AWSSKPIIRD NNSSNNTIVS 240 GMNLMMAMDD LESPTSTLNF PAAYNNTAYP MQSLNANKQL PQFKQEVTNT MVLQDIHAYN 300 GCTDASTTTT NAWFNEDVMI RTSGGNDDVN NVMLPAAAAA LSNIMEGFCG GTTADMLVYN 360 SDEQNMAAGE ISDTGGDESC GRSDNNVEEN RSYWDSILNL VNASPSGSPA CVLI

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence

MGRSPCCEKV GLKKGPWTPE EDQKLLSYIQ EHGHGSWRAL PAKAGLQRCG KSCRLRWTNY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIANHLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPATHKPKH HEAYGSGSGH AKDAANLSHM AQWESARLEA EARLVRESKQ LIMTNHPLQF  180
QHHQLVNISP STQTHGLLMS KASAATSALP CLDVLKAWQG AWSSKPIIRD NNSSNNTIVS  240
GMNLMMAMDD LESPTSTLNF PAAYNNTAYP MQSLNANKQL PQFKQEVTNT MVLQDIHAYN  300
GCTDASTTTT NAWFNEDVMI RTSGGNDDVN NVMLPAAAAA LSNIMEGFCG GTTADMLVYN  360
SDEQNMAAGE ISDTGGDESC GRSDNNVEEN RSYWDSILNL VNASPSGSPA CVLI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	1e-112	MYB family protein