 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Rmu_co8441915.1_g000001.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
| Family | GeBP | ||||||||
| Protein Properties | Length: 247aa MW: 28885.9 Da PI: 6.9764 | ||||||||
| Description | GeBP family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF573 | 97.8 | 1e-30 | 61 | 151 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehd 85
lfqr+wseeDei+lL+G+ ++++++ +ps+d++af +f+k++++++vsksql +Kirr+KkKf++ v++ + + +++h+
Rmu_co8441915.1_g000001.1 61 LFQRVWSEEDEIILLKGMNEYTMEKRLDPSADVNAFLNFIKGKLKLNVSKSQLQDKIRRMKKKFENIVNN-----KYKPTNPHE 139
79*******************************************************************9.....78899**** PP
DUF573 86 qkifelskkiWg 97
+felsk +Wg
Rmu_co8441915.1_g000001.1 140 WAAFELSKNVWG 151
***********8 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 247 aa Download sequence |
KGNDEEDLKK AKKRKGNDEE DLKKAKKKKG NDEEDLKKAK KKGIDKEDDG VEEELEKPKQ 60 LFQRVWSEED EIILLKGMNE YTMEKRLDPS ADVNAFLNFI KGKLKLNVSK SQLQDKIRRM 120 KKKFENIVNN KYKPTNPHEW AAFELSKNVW GDGEDLDGKV EQLKSNGNSQ NMLREVLWFD 180 NGFKELRLSE TIVNQGLEWI EESNCAELLK DRWNKLHVAE LEHFVMKAEL MRDQAKLILE 240 ALKSSNH |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 12 | 29 | KKRKGNDEEDLKKAKKKK |
| 2 | 12 | 42 | KKRKGNDEEDLKKAKKKKGNDEEDLKKAKKK |
| 3 | 13 | 30 | KKRKGNDEEDLKKAKKKK |
| 4 | 26 | 46 | KKKKGNDEEDLKKAKKKGIDK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G00390.1 | 1e-22 | GeBP family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|