PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_co8413867.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | NF-X1 | ||||||||
Protein Properties | Length: 117aa MW: 12881.3 Da PI: 8.428 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 20.6 | 9.8e-07 | 19 | 38 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H+C++ C+ G+CppC++ Rmu_co8413867.1_g000001.1 19 CGRHPCKRRCCDGDCPPCSE 38 ******************85 PP | |||||||
2 | zf-NF-X1 | 18.7 | 3.8e-06 | 40 | 64 | 1 | 19 |
zf-NF-X1 1 CG......kHkCqklCHeGpCppCp 19 CG +HkC ++CH+G C pCp Rmu_co8413867.1_g000001.1 40 CGrklrckNHKCPSPCHRGACAPCP 64 788888879***************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 117 aa Download sequence |
VPCHQDLACE RKCQRLRDCG RHPCKRRCCD GDCPPCSEIC GRKLRCKNHK CPSPCHRGAC 60 APCPVMVTIA CLCGATHFEV PCGTEMDQKP PRCRKPCPIT PLCRHGPNSK VDLVALA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G05660.1 | 6e-57 | NF-X1 family protein |