PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8347871.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | HSF | ||||||||
Protein Properties | Length: 208aa MW: 24179.9 Da PI: 10.7617 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 115.7 | 3e-36 | 20 | 111 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 Fl+k+y++++d+++++++sws+ g sfvv+d+++f ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ Rmu_co8347871.1_g000001.1 20 FLNKTYDMVDDPSTNRIVSWSRGGGSFVVWDPHSFVMNLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEG 94 9****************************************************************999.........******* PP XXXXXXXXXXXXXXXXX CS HSF_DNA-bind 86 Fkkgkkellekikrkks 102 F +g+k+ll++i+r+k+ Rmu_co8347871.1_g000001.1 95 FLRGQKHLLKNIRRRKT 111 ***************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence |
MTVAPPQPME GLNDTGPPPF LNKTYDMVDD PSTNRIVSWS RGGGSFVVWD PHSFVMNLLP 60 RYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK HLLKNIRRRK TPSQPIPAHQ 120 ALGPCVEVGR FGLDGEVDRL RRDKQVLMME LVKLRQQQQS TRACLQAMEQ RLKGTEMKQQ 180 QMMAFLARAL QNPAFLQQLV QHKEKRKE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22830.1 | 1e-108 | HSF family protein |