PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8279817.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 224aa    MW: 24253.8 Da    PI: 9.449
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8279817.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64e-31362159
                               ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY  1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                               l+Dg++WrKYGqK  kg+++pr+YYrCt + +Cpv+k+v+r+aed +++++tYeg+Hnh+
  Rmu_co8279817.1_g000001.1  3 LNDGCQWRKYGQKIAKGNPCPRAYYRCTVSpSCPVRKQVQRCAEDMSILITTYEGNHNHP 62
                               58**************************999****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MQLNDGCQWR KYGQKIAKGN PCPRAYYRCT VSPSCPVRKQ VQRCAEDMSI LITTYEGNHN  60
HPLPMSATAM ASTTSAAASM LQSHSSTSQQ GLVNSTTAPI STSTSNLHGH GPNFTNSLSQ  120
NSSRLLPQSQ FYFPNSSIST NNSHPTITLD LTAPSPSHFG LRFPSGLPRY SSSTSLNFSS  180
SSSSSFDHNT LLQTPNWINN PAAAGYFNYG TVLSHQNRMN QAVG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18860.12e-40WRKY family protein