PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8278389.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | GeBP | ||||||||
Protein Properties | Length: 169aa MW: 20097.1 Da PI: 9.2544 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 50.8 | 4.8e-16 | 102 | 168 | 3 | 71 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk 71 +r+ws+eDe+ lL+ ++d++++ ++++ fy+ v+ + + ++sk+ l eKi rLKkK ++ v+k Rmu_co8278389.1_g000001.1 102 RKRIWSKEDELELLKNFLDYRTRPR--TANETTSFYDEVNPKFKDQFSKRKLAEKIARLKKKHRNVVNK 168 68******************77766..6689*********************************99887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence |
MPWPLLKWIM YTSSSSSSSS EDFSDAEDEG TSKKGNDHGR DPNKQGEQNH DDDSNEDDFS 60 YKPQEDETSN SSDYTFTINE PRRKRRRIDN KEDSTIVSFK RRKRIWSKED ELELLKNFLD 120 YRTRPRTANE TTSFYDEVNP KFKDQFSKRK LAEKIARLKK KHRNVVNKM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 104 | RRKRRRIDNKEDSTIVSFKRRKR |
2 | 83 | 87 | RKRRR |
3 | 83 | 105 | RRKRRRIDNKEDSTIVSFKRRKR |
4 | 84 | 88 | KRRRI |
5 | 84 | 106 | RRKRRRIDNKEDSTIVSFKRRKR |
6 | 85 | 107 | RRKRRRIDNKEDSTIVSFKRRKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 4e-15 | GeBP family protein |