PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8258053.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | GRAS | ||||||||
Protein Properties | Length: 242aa MW: 28602.2 Da PI: 8.6102 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 230 | 1.1e-70 | 1 | 240 | 137 | 374 |
GRAS 137 egppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesv 218 +gpp+++iT+++ p++g +e++eetg+rLa+++++++vpfe+nv +a+++e++++e+L+++++E ++Vn++++l +++de+v Rmu_co8258053.1_g000001.1 1 GGPPQIQITAIELPQPGfrPTERVEETGRRLARYCAKFNVPFEYNV-IAQKWESIRVEDLNIDRNELIVVNCMHRLRHIPDETV 83 589*************9****************************9.7************************************ PP GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302 ++s+rd+vLkl+k+++P+++v+ + ++ + F++rf eal ++ alfd++ea +pre+++r++ Ere+ gr+i nvvaceg Rmu_co8258053.1_g000001.1 84 MVSSPRDRVLKLIKKINPDLFVHGIINGTYSPPFFVTRFKEALFHFGALFDMFEAIVPREDQWRQMFEREIYGRDIINVVACEG 167 ************************************************************************************ PP GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 er+er et+++W+ r + GFk+vpl+++ +++k++l+ ++ + +r++e+ +++++gWk+r ++++S+W+ Rmu_co8258053.1_g000001.1 168 LERVERPETYKQWNLRTLRTGFKQVPLEQDCLMKVKSMLKLTSyHKDFRIDEDGEWMLQGWKGRIVMALSFWK 240 *****************************************999999*************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence |
GGPPQIQITA IELPQPGFRP TERVEETGRR LARYCAKFNV PFEYNVIAQK WESIRVEDLN 60 IDRNELIVVN CMHRLRHIPD ETVMVSSPRD RVLKLIKKIN PDLFVHGIIN GTYSPPFFVT 120 RFKEALFHFG ALFDMFEAIV PREDQWRQMF EREIYGRDII NVVACEGLER VERPETYKQW 180 NLRTLRTGFK QVPLEQDCLM KVKSMLKLTS YHKDFRIDED GEWMLQGWKG RIVMALSFWK 240 PA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-108 | GRAS family protein |