PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co8253881.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MIKC_MADS

Protein Properties

Length: 133aa MW: 14987.2 Da PI: 7.8061

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co8253881.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.3	2.3e-19	9	45	15	51
HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 +R +++lKKA+ELS+LCdaeva+i fs++g+l+eyss Rmu_co8253881.1_g000001.1 9 RRHATLLKKANELSILCDAEVAIIAFSPDGELHEYSS 45 5999*******************************96 PP
2	K-box	24.1	1.5e-09	81	133	21	73
K-box 21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell 73 + L+++ + L+ e+ +++G++L+ Ls L L +q k+l + skK ell Rmu_co8253881.1_g000001.1 81 KQELQERHKALRLEKLQRMGKELDGLSSDALATLLEQQTKGLLAVHSKKVELL 133 46799********************************************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 133 aa Download sequence
MPKTANPGRR HATLLKKANE LSILCDAEVA IIAFSPDGEL HEYSSTSMEH TLERYKYRTG 60 LVLPSRVESP APEEHRHEPA KQELQERHKA LRLEKLQRMG KELDGLSSDA LATLLEQQTK 120 GLLAVHSKKV ELL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	2e-19	MIKC_MADS family protein