PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rmu_co8167220.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 176aa MW: 19665.8 Da PI: 4.4508 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.7 | 9.9e-12 | 2 | 28 | 19 | 47 |
TTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqky 47 +G++ W+tIar ++ gRt++ +k++w++ Rmu_co8167220.1_g000001.1 2 HGNK-WATIARLLP-GRTDNAIKNHWNST 28 9***.*********.***********986 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence |
LHGNKWATIA RLLPGRTDNA IKNHWNSTLR RRRLAESSSA SSELKRLIGA TSDDPETKRQ 60 CLRGASAEED SFKAVAAGVE GVLTSLTLSP PGQKVENEVV LKSEEVGEEE EEDNDDHQEE 120 AVDDEEKCTV EMEETCLMTM MQRMIAQEVR NYIESLRAEN GLVFGLQSTV QNDRKC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G09230.1 | 1e-12 | MYB family protein |