PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rmu_co8108556.1_g000001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | GRAS | ||||||||
Protein Properties | Length: 197aa MW: 22611.8 Da PI: 6.3971 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 239.8 | 1.1e-73 | 2 | 196 | 177 | 373 |
GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260 ef+ v d+++++L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vkslsPkv ++veqe+++n+++Fl+rf+e+ Rmu_co8108556.1_g000001.1 2 EFHG-VPVFAPDVTPDMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRIVKSLSPKVTTLVEQESNTNTTPFLNRFIET 84 5666.455667899********************************************************************** PP GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344 l+yy a+f+s++++lpr+s+eri+vE+++l+r+ivnv+aceg+er+erhe ++kW++rl++aGF+++pls+++++ +++llr + Rmu_co8108556.1_g000001.1 85 LDYYLAMFESIDVTLPRNSKERINVEQHCLARDIVNVIACEGKERVERHELFGKWKSRLTMAGFRQYPLSSYVNSVIRSLLRCY 168 *********************************************************************************999 PP GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaW 373 + + y++ee++g+++lgWk+r+Lvs+SaW Rmu_co8108556.1_g000001.1 169 S-EHYKLEEKDGAMLLGWKERNLVSASAW 196 9.66************************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence |
VEFHGVPVFA PDVTPDMLDV RPGEALAVNF PLQLHHTPDE SVDVNNPRDG LLRIVKSLSP 60 KVTTLVEQES NTNTTPFLNR FIETLDYYLA MFESIDVTLP RNSKERINVE QHCLARDIVN 120 VIACEGKERV ERHELFGKWK SRLTMAGFRQ YPLSSYVNSV IRSLLRCYSE HYKLEEKDGA 180 MLLGWKERNL VSASAWH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04890.1 | 7e-94 | GRAS family protein |