PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0242271
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 291aa    MW: 33203.5 Da    PI: 5.7095
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0242271genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.91e-1960112456
                             -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             +++++++q+++Le  Fe ++++  e++ +LA++lgL+ rqV +WFqNrRa++k
  RcHm_v2.0_Chr7g0242271  60 KRRLSSHQVKALEMSFEVENKLEPERKVKLAAELGLEPRQVAIWFQNRRARWK 112
                             5589************************************************9 PP
2HD-ZIP_I/II130.37.6e-4259150293
             HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                             kkrrls++qvk+LE+sFe e+kLeperKv+la eLgl+prqva+WFqnrRAR+ktkqlE+dy++Lk+ ydalk++ + L++++++L+
  RcHm_v2.0_Chr7g0242271  59 KKRRLSSHQVKALEMSFEVENKLEPERKVKLAAELGLEPRQVAIWFQNRRARWKTKQLERDYSVLKADYDALKHNYDGLDRQNKALA 145
                             9************************************************************************************** PP

             HD-ZIP_I/II  89 eelke 93 
                             ++lk+
  RcHm_v2.0_Chr7g0242271 146 DQLKD 150
                             **986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    
MKRFSRSDSL DSLGTLIPNY PPKEEEKHNK KNNGGYSKEF QTMLDSYDQE DCGEEILVKK  60
RRLSSHQVKA LEMSFEVENK LEPERKVKLA AELGLEPRQV AIWFQNRRAR WKTKQLERDY  120
SVLKADYDAL KHNYDGLDRQ NKALADQLKD LKAKLCRDNT ESGQSVKEES PISVYKSSVV  180
EQSRDQDLSD NGDNAGLDLY KNLKSKDGSS DSDSNGAMKE ESNGNESSLG YNGHSLSSNS  240
MMNWFQVSDS RSGNKGYHHQ AQFGRMEEQS LFSTEESCNF FSVDQAPSLH W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15988KKRRLSSHQVKALEMSFEVENKLEPERKVK
2107115RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G40060.17e-46HD-ZIP family protein