PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0241021
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 276aa    MW: 31621.6 Da    PI: 4.6026
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0241021genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-3057115259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+vers++d +v++itY+++Hnh+
  RcHm_v2.0_Chr7g0241021  57 SDFWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERSKTDASVLIITYTSSHNHP 115
                             699***********************9988****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MDETLSSPEQ DSEVSKELMI RPETQASKRR KVAHQKTVVT VKIGPNVGKL KNEGPPSDFW  60
SWRKYGQKPI KGSPYPRGYY RCSTSKGCSA KKQVERSKTD ASVLIITYTS SHNHPGPDVT  120
STTKNQSPPP KEAQMQPNSE DDDHDHTAEV PKEDEPEPEP EPDQDEEQEQ ERKVDEQQEQ  180
DHFHYIQSPI RSSQDIVIYQ EEDPFSSGNH LEKTLLDEHP HPLCYSQLLS FSSTPKSEEE  240
EDFYDELEEL LPTSSYFPSF MRSNLSQLER IPFVPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.13e-35WRKY family protein