PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0240841
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 470aa    MW: 54232.9 Da    PI: 7.1185
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0240841genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00073228250123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             y C+ C    +rk++L+rH+r++
  RcHm_v2.0_Chr7g0240841 228 YFCEFCLNFMKRKEQLQRHMRKC 250
                             78*******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    
MGRPTSFDSY IVIICCYHSP TAKLRMGSIG TSPVAENGSD TPNGAAVTYD GENKPHSGDG  60
YPPLAAETTP ESEASKKRRM SMLPLEVGTS VMCRWRDSKY HPVKVIERRR VHGGGPNDYE  120
YYVHYTEFNR RLDEWVKLDQ LDLDSVEAVV DEKVEDKVTS LKMTRHQKRK IDETHVEGHE  180
ELDAASLREH EEFTKVKNIA TIELGRYEIE TWYFSPFPPE YNDSLKLYFC EFCLNFMKRK  240
EQLQRHMRKC DLKHPPGDEI YRNHTLSMFE VDGKKNKVYG QNLCYLAKLF LDHKTLYYDV  300
DLFLFYILCE CDDRGCHMVG YFSKEKHSEE SYNLACILTL PPYQRKGYGK FLIAFSYELS  360
KKEGKVGTPE RPLSDLGLLS YRGYWTRVLL DILKKHKGNI SIKELSDMTA IKAEDILTTL  420
QSLELIQYRK GQHVICADPK VLDRHLKAAG PAGLEVDVGK LIWTPYKEQG