PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0240691
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 608aa    MW: 66554 Da    PI: 6.9334
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0240691genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.53.4e-25145247199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f k+ltpsd+++ g +++p+ +a+++        +++ +  tl+++d++g +W++++iyr++++r++lt+GW++Fv+ + L +gD+v
  RcHm_v2.0_Chr7g0240691 145 FAKILTPSDANNGGGFSVPRFCADSIfpplnyqAEPPVQ--TLSVTDLHGGVWDFRHIYRGTPRRHLLTTGWSKFVNHKMLVAGDSV 229
                             89*********************999****985444444..9********************************************* PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             vF++++ +++e++v+v+r+
  RcHm_v2.0_Chr7g0240691 230 VFMRSS-RGGEMYVGVRRA 247
                             ***765.8999*****996 PP
2Auxin_resp89.27.7e-30289372183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             aa+ a++ ++FevvY+P+a++++Fvvk+e vekalkv +++GmR+kma+et+dss+ ++ +Gt ++    ++  W++S+Wr+L+
  RcHm_v2.0_Chr7g0240691 289 AAEMAAQDMPFEVVYYPKAGWADFVVKAEVVEKALKVFWTAGMRVKMAMETDDSSRMTWfQGTLSSAFVPENGPWKGSPWRMLQ 372
                             688999****************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 608 aa     Download sequence    
MPPNSHRHTR SRSHSHSHSH SHAPPPPQLV SIDPKIWRAC AGNSVTIPTL HSRVYYFPQG  60
HLEHSTSSSS APVLLSPLVL SQPLILCRIA AVQFLADPTT DEVLAKLLLH PVHSGLSPHH  120
RELSAAAAAE EGEEEDDGGD RVVSFAKILT PSDANNGGGF SVPRFCADSI FPPLNYQAEP  180
PVQTLSVTDL HGGVWDFRHI YRGTPRRHLL TTGWSKFVNH KMLVAGDSVV FMRSSRGGEM  240
YVGVRRAVRA SAGGDCGRWS SHIGLKSEEE RSGGDGFKTR LSAEAVAEAA EMAAQDMPFE  300
VVYYPKAGWA DFVVKAEVVE KALKVFWTAG MRVKMAMETD DSSRMTWFQG TLSSAFVPEN  360
GPWKGSPWRM LQVTWDEPEV LQNAKRVSPW QVDFVASTPS LHTVPSLHTV FPPTKRLRAP  420
LNPGLLRNGE EEFMIPITGA ANSTMGQFNA SLLNYNIFPA GMQGARQDLF CVSNVSHLLN  480
ENSPRMCTYN SFGNNNMVPR LKRVSTELNI GSPQSDQLSP DSQSSPHSFG MELDGNRNCN  540
STKVGRSSFQ LFGQTIQLEG IDAVGCTGGG GNIGYNETEL LNNQLDLSYT KLLERIDVRV  600
SAVEACTL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-153ARF family protein