PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0238891 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 33760.9 Da PI: 6.2635 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.2 | 2.6e-20 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv++++q+G g+W++ ++ g++R++k+c++rw +yl RcHm_v2.0_Chr7g0238891 14 KGPWTPEEDEKLVQYIQQHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 50.7 | 4.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg +++eE++ +++++ lG++ W++Ia ++ gRt++++k++w+++l RcHm_v2.0_Chr7g0238891 67 RGHFSQEEEQTILHLHSILGNK-WSAIATHLD-GRTDNEIKNFWNTHL 112 799*******************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 302 aa Download sequence |
MGKSPCCDEP GLKKGPWTPE EDEKLVQYIQ QHGHGSWRAL PKLAGLNRCG KSCRLRWTNY 60 LRPDIKRGHF SQEEEQTILH LHSILGNKWS AIATHLDGRT DNEIKNFWNT HLKKKLIQMG 120 IDPMTHQPRT DLFSNLQDLL PLQFQTLDQL AATTLHDAAE AVAQLVKLQY LHQQYVLQSH 180 LLNSSVGSYA PPPIQENLPV LNSSQLVLEN ASSSSQPLHY GSSVPHHNNP QVPFSTFAVP 240 EIDEMGQCTN FTSMVSSLSQ AEKNPPEIYE YSPYSSNTPT PVADTLINNP GDASCSTSVM 300 EE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34670.1 | 2e-97 | MYB family protein |