PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0236811 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 237aa MW: 25896.9 Da PI: 4.4184 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.9 | 4.7e-27 | 8 | 55 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +ien rqvtfskRr+g++KKA ELSvLCdaevavi+fsstgklye RcHm_v2.0_Chr7g0236811 8 KIENLPARQVTFSKRRQGLFKKAGELSVLCDAEVAVIVFSSTGKLYES 55 79********************************************95 PP | |||||||
2 | K-box | 50.5 | 8.8e-18 | 84 | 169 | 13 | 98 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + + ++e +L+ke+ ++R++ G+dLe+L++ eLq+Le+++e +l+++ + K+e +++qi l k el e+n++Lr++l RcHm_v2.0_Chr7g0236811 84 ELQLENNECMRLNKELADKILKLRQMEGQDLEELTIDELQRLENRIEGGLSRVLQAKDESIMSQIVALETKGAELTEANNQLRQRL 169 55667889999999887777788************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence |
MNKIKIEKIE NLPARQVTFS KRRQGLFKKA GELSVLCDAE VAVIVFSSTG KLYESSSSST 60 KGVIARYNLH TEDGEEGDQQ PPPELQLENN ECMRLNKELA DKILKLRQME GQDLEELTID 120 ELQRLENRIE GGLSRVLQAK DESIMSQIVA LETKGAELTE ANNQLRQRLG MLSNGDGNRA 180 SGVALESEIS TDEEGGMASE FATSSTGYYG TGSSTSSLED DSSDNTLSLK LGLPRCG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24540.1 | 9e-59 | MIKC_MADS family protein |