PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0236801
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 25605.1 Da    PI: 5.4852
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0236801genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.68.1e-241360249
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            +i+n s rqvtfskRr g+lKKA ELSvLCd e aviifs tgkl+e 
  RcHm_v2.0_Chr7g0236801 13 KIDNLSARQVTFSKRRRGLLKKAGELSVLCDCEYAVIIFSATGKLFES 60
                            69*******************************************985 PP

2K-box43.11.8e-15931682297
                   K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                              kL ke+    r +R++ GedLe L + eL++Le+++e +l+++  +K+e ++ +i  l  k  el e+n+ Lr+ 
  RcHm_v2.0_Chr7g0236801  93 IKLSKELADKTRVLRQMNGEDLEGLHMDELKKLEEDIEGGLSRVLHTKEEKIMGEIMALEAKGAELLEANNHLRQT 168
                             57777777778999************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MSKPTREKIK IRKIDNLSAR QVTFSKRRRG LLKKAGELSV LCDCEYAVII FSATGKLFES  60
SSSSTKDVIA RYKAHIENVE KLEPSLELQF DRIKLSKELA DKTRVLRQMN GEDLEGLHMD  120
ELKKLEEDIE GGLSRVLHTK EEKIMGEIMA LEAKGAELLE ANNHLRQTMG MISNTNGNKA  180
GVLALESDIS TAEEGLSSES ATNASSDCAT GSSLDVDSAD DTLSLKLGLP YRG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-67MIKC_MADS family protein