PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0236801 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 233aa MW: 25605.1 Da PI: 5.4852 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 74.6 | 8.1e-24 | 13 | 60 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+n s rqvtfskRr g+lKKA ELSvLCd e aviifs tgkl+e RcHm_v2.0_Chr7g0236801 13 KIDNLSARQVTFSKRRRGLLKKAGELSVLCDCEYAVIIFSATGKLFES 60 69*******************************************985 PP | |||||||
2 | K-box | 43.1 | 1.8e-15 | 93 | 168 | 22 | 97 |
K-box 22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 kL ke+ r +R++ GedLe L + eL++Le+++e +l+++ +K+e ++ +i l k el e+n+ Lr+ RcHm_v2.0_Chr7g0236801 93 IKLSKELADKTRVLRQMNGEDLEGLHMDELKKLEEDIEGGLSRVLHTKEEKIMGEIMALEAKGAELLEANNHLRQT 168 57777777778999************************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MSKPTREKIK IRKIDNLSAR QVTFSKRRRG LLKKAGELSV LCDCEYAVII FSATGKLFES 60 SSSSTKDVIA RYKAHIENVE KLEPSLELQF DRIKLSKELA DKTRVLRQMN GEDLEGLHMD 120 ELKKLEEDIE GGLSRVLHTK EEKIMGEIMA LEAKGAELLE ANNHLRQTMG MISNTNGNKA 180 GVLALESDIS TAEEGLSSES ATNASSDCAT GSSLDVDSAD DTLSLKLGLP YRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-67 | MIKC_MADS family protein |