PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0234171 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MYB | ||||||||
Protein Properties | Length: 162aa MW: 19510.5 Da PI: 10.4633 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 36.1 | 1.5e-11 | 18 | 64 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W + Ed +l+d+++++G +W+ ++ g+ R++k c++rw++yl RcHm_v2.0_Chr7g0234171 18 GTWAPVEDRKLLDYITRFGYWNWRQLPKFAGLSRCGKKCRLRWLNYL 64 78*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.5 | 2e-15 | 71 | 114 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 + T eE+e++++++++lG++ W++Ia+ ++ gRt+ ++k++w+ RcHm_v2.0_Chr7g0234171 71 RNYTCEEEEIIIRLHEKLGNK-WSAIAEQLQ-GRTDIEVKNHWHRN 114 67899****************.*********.***********975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence |
MVRTPCCDQC NKGSLKNGTW APVEDRKLLD YITRFGYWNW RQLPKFAGLS RCGKKCRLRW 60 LNYLNPNIKR RNYTCEEEEI IIRLHEKLGN KWSAIAEQLQ GRTDIEVKNH WHRNLKRRFM 120 VNKRTRPPQF QSDAGAICDD QPRTKRIPQT PDYLKDYVWS KR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 4e-48 | MYB family protein |