PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0232831

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 1415aa MW: 159803 Da PI: 6.662

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0232831	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	26.2	1.6e-08	1110	1169	2	58
--SS-EEEEEEE--..TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKev..kgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 dDg+nW + + kg++ r Y Ct++ gC+++ +v +d +++eitY g+H++ RcHm_v2.0_Chr7g0232831 1110 DDGFNWFCHNRHLIpdKGTTDLRCGYVCTHRpGCWARANVRSFIDDLTILEITYIGRHTC 1169 8999999999998877889999******99************************98 PP
2	WRKY	57.1	3.7e-18	1194	1253	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++W KY q ++ g++ pr YY C+ + gC++ k+v+rs+ d+++++itY g+H+++ RcHm_v2.0_Chr7g0232831 1194 SDGFRWVKYAQTDIPGAKSPRVYYVCSPQnvgGCMAIKEVQRSN-DKEILQITYIGRHTCT 1253 7************************998999*******.************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1415 aa Download sequence
MDSHLHQVGR LLSAAPDDVA YVGIWGMGGL GKTTIARAVY YKISHQFDHR CFLENVREGF 60 SSYGQVQMQL QFLSGIFKGI VNSFDGGYMT MLERLSRIKI LVVLDDVSRS LEIDALLGSP 120 QERSLGCGSK VIVTTRDEQV LGGFRKYKPK PLSDPDALEL FNQNAFRKMP PSEEYVHLSR 180 RAIKYAHGLP LALKTWGAHL RDRSPSVWKD ELEKIKKIPD LDIHHVHHVL RRSFDGLDEY 240 QKNIFLDIAC FFKGMHIEYV EIILNSCGFF ASSGLSVLID RALVSISRFG ELEIHDFLQE 300 IGRDIVCKEP WKHSRLWSYE DVQDTLTQNK AMEVEGVMIE LSDSKDIRVD AQAFFRMMNL 360 RLLRITYPPY VNPLIEIRKL FEGELWPERI YGYLPNFDGK LHLNGDLKFL SHKLRVLAWH 420 GCPVKTLPSN FYPKCLVDLD MRHSHIEQLW QEPKAAKELI SINLSSCKNL KEIPLCTEAP 480 KLQKLILNYC TSLVEVSPSI SALTGLVFLS LYGCTELKSL PSNIHMMKFL KTLVLSGCSN 540 LEMFPEISED MEALSELRLD RTAIKKLPSS IERLRGLKSL DLYGCSNLEM FPEISEDMGA 600 LSELMLDGSA IKEIPSSIER LRGLKSLSMK NCTSLVCLPD SICNLADLTY LYLEGCSKLC 660 NLPENLGNLK SLCELKVEDT GIKRLPACIL HLKLGRLKFH YCKQMEAPLS SWPSSIEDRC 720 TVVVHLDFSY CNLKVLSDAI AYFRSLKVLN LSRNNNLKSL PAAMNQLGYL ERLQLEDCKR 780 LRSIPELSSR ISCINAHNCT ALEAVSTPQS PYDIGRCFIF SNCSQLIQRD FFRDIVETHF 840 PPQGNCSRPF YFSIPGTEIP EQFIHQGRGS SVTAQLPQNW FHSNKFLGFA ICAVTNQPQG 900 VDYWKLSARC FCTFKGDHCE YRFSFSLFNI YFDGFYRDWL VSNHMLVGYV PWSEFGINGE 960 EVNERHYTEA KFEIELLHRE TLEEDGVLFD PCIERCDPCI ERCGVRFVFA NNEDEEVAHQ 1020 DFGEPMVQGD NSEIRSLEGC SAERSGSDIT SDTSDEEEQY LKLSEVFEGA NREPSYIRNE 1080 DNESSRKRKT LESWTQEVRV TSGLMQGDLD DGFNWFCHNR HLIPDKGTTD LRCGYVCTHR 1140 PGCWARANVR SFIDDLTILE ITYIGRHTCW KTLPMPMLTH QVRVTTGMET EGPSDGFRWV 1200 KYAQTDIPGA KSPRVYYVCS PQNVGGCMAI KEVQRSNDKE ILQITYIGRH TCTLASTSNG 1260 GRVDSSTSAA NGASSVHDQV VQSPSSPGAN GHGGNVTRVA DNPVNDNNMI VLQDASSQDM 1320 EPTPSNVASV SSQPVISSPS LTQVNLQPQS CSQPIVIRSS PNSRTIVSPN TGMLMKTKSV 1380 AQKAKPMPKP VTKTSTRARA QQGPKEDSDN KMWKP

Sequence ? help Back to Top

Protein Sequence Length: 1415 aa Download sequence

MDSHLHQVGR LLSAAPDDVA YVGIWGMGGL GKTTIARAVY YKISHQFDHR CFLENVREGF  60
SSYGQVQMQL QFLSGIFKGI VNSFDGGYMT MLERLSRIKI LVVLDDVSRS LEIDALLGSP  120
QERSLGCGSK VIVTTRDEQV LGGFRKYKPK PLSDPDALEL FNQNAFRKMP PSEEYVHLSR  180
RAIKYAHGLP LALKTWGAHL RDRSPSVWKD ELEKIKKIPD LDIHHVHHVL RRSFDGLDEY  240
QKNIFLDIAC FFKGMHIEYV EIILNSCGFF ASSGLSVLID RALVSISRFG ELEIHDFLQE  300
IGRDIVCKEP WKHSRLWSYE DVQDTLTQNK AMEVEGVMIE LSDSKDIRVD AQAFFRMMNL  360
RLLRITYPPY VNPLIEIRKL FEGELWPERI YGYLPNFDGK LHLNGDLKFL SHKLRVLAWH  420
GCPVKTLPSN FYPKCLVDLD MRHSHIEQLW QEPKAAKELI SINLSSCKNL KEIPLCTEAP  480
KLQKLILNYC TSLVEVSPSI SALTGLVFLS LYGCTELKSL PSNIHMMKFL KTLVLSGCSN  540
LEMFPEISED MEALSELRLD RTAIKKLPSS IERLRGLKSL DLYGCSNLEM FPEISEDMGA  600
LSELMLDGSA IKEIPSSIER LRGLKSLSMK NCTSLVCLPD SICNLADLTY LYLEGCSKLC  660
NLPENLGNLK SLCELKVEDT GIKRLPACIL HLKLGRLKFH YCKQMEAPLS SWPSSIEDRC  720
TVVVHLDFSY CNLKVLSDAI AYFRSLKVLN LSRNNNLKSL PAAMNQLGYL ERLQLEDCKR  780
LRSIPELSSR ISCINAHNCT ALEAVSTPQS PYDIGRCFIF SNCSQLIQRD FFRDIVETHF  840
PPQGNCSRPF YFSIPGTEIP EQFIHQGRGS SVTAQLPQNW FHSNKFLGFA ICAVTNQPQG  900
VDYWKLSARC FCTFKGDHCE YRFSFSLFNI YFDGFYRDWL VSNHMLVGYV PWSEFGINGE  960
EVNERHYTEA KFEIELLHRE TLEEDGVLFD PCIERCDPCI ERCGVRFVFA NNEDEEVAHQ  1020
DFGEPMVQGD NSEIRSLEGC SAERSGSDIT SDTSDEEEQY LKLSEVFEGA NREPSYIRNE  1080
DNESSRKRKT LESWTQEVRV TSGLMQGDLD DGFNWFCHNR HLIPDKGTTD LRCGYVCTHR  1140
PGCWARANVR SFIDDLTILE ITYIGRHTCW KTLPMPMLTH QVRVTTGMET EGPSDGFRWV  1200
KYAQTDIPGA KSPRVYYVCS PQNVGGCMAI KEVQRSNDKE ILQITYIGRH TCTLASTSNG  1260
GRVDSSTSAA NGASSVHDQV VQSPSSPGAN GHGGNVTRVA DNPVNDNNMI VLQDASSQDM  1320
EPTPSNVASV SSQPVISSPS LTQVNLQPQS CSQPIVIRSS PNSRTIVSPN TGMLMKTKSV  1380
AQKAKPMPKP VTKTSTRARA QQGPKEDSDN KMWKP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1085	1090	SRKRKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.1	2e-75	WRKY family protein