PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0230721 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 166aa MW: 18926.4 Da PI: 9.9966 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.5 | 2.4e-25 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien rqvtf+kRr+g+lKKA+ELSvLCda++ v+i+ss+gkl+e RcHm_v2.0_Chr7g0230721 9 KKIENPVHRQVTFCKRRAGLLKKAKELSVLCDADIGVLIYSSHGKLFEL 57 68********************************************996 PP | |||||||
2 | K-box | 49.4 | 1.9e-17 | 84 | 159 | 9 | 84 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 + e+++ ++e++ Lk+eie Lq+ +R + G + +++sl eLq Le++Le + ++Rs K+++ll++i+ l++ RcHm_v2.0_Chr7g0230721 84 AMETQTLDAKKEINLLKQEIEILQKGLRYMFGGGAGTMSLDELQVLEKHLELWIYHVRSAKMDILLQEIQLLRNSV 159 5677788899***********************************************************9999765 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence |
MARGKVQMKK IENPVHRQVT FCKRRAGLLK KAKELSVLCD ADIGVLIYSS HGKLFELATK 60 GTMQGLIERY MKMKPARAPQ AETAMETQTL DAKKEINLLK QEIEILQKGL RYMFGGGAGT 120 MSLDELQVLE KHLELWIYHV RSAKMDILLQ EIQLLRNSVS SLIEHF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 7e-70 | MIKC_MADS family protein |