PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0229221 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 222aa MW: 25566.2 Da PI: 9.7991 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.8 | 9.4e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELS+LC+aeva+i+fss+g+lyeys+ RcHm_v2.0_Chr7g0229221 9 KRIENTTNRQVTFCKRRNGLLKKAYELSILCEAEVALIVFSSRGRLYEYSN 59 79***********************************************95 PP | |||||||
2 | K-box | 105.9 | 4.9e-35 | 79 | 173 | 6 | 100 |
K-box 6 gks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 +e +a+++qqe+akL+ +i++Lq+++Rhl+G++L++L++keL+qLe++Le++l++iRskK+e+ll++ie+lqk+e el++en RcHm_v2.0_Chr7g0229221 79 A-TtITEINAQYYQQESAKLRHQIQMLQNSNRHLMGDSLTNLTVKELKQLENRLERGLTRIRSKKHEMLLAEIEYLQKREVELENEN 164 3.348899******************************************************************************* PP K-box 92 kaLrkklee 100 +r+k++e RcHm_v2.0_Chr7g0229221 165 VLIRAKIAE 173 ******986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSILCE AEVALIVFSS RGRLYEYSNN 60 NIRNTIERYK KASSDNSGAT TITEINAQYY QQESAKLRHQ IQMLQNSNRH LMGDSLTNLT 120 VKELKQLENR LERGLTRIRS KKHEMLLAEI EYLQKREVEL ENENVLIRAK IAEVERLQQA 180 DLVSGAEFNA IQALASRNFF GSTMVEGEAS YSQPEKKLLH LG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 1e-117 | MIKC_MADS family protein |