PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0228721 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | C2H2 | ||||||||
Protein Properties | Length: 136aa MW: 15591.1 Da PI: 8.6954 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.4 | 1.3e-05 | 70 | 94 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC C ++F+ ksnL++H + H RcHm_v2.0_Chr7g0228721 70 KCDyeGCLQTFTKKSNLRQHVKAvH 94 688889**************99877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 136 aa Download sequence |
MRIPMLDRVE AFCSEPGCMK QFPNEQCLKA HIQSCHQHIT CEICGTKQLK KNIKSHLRTH 60 EEGGSMERIK CDYEGCLQTF TKKSNLRQHV KAVHLENKPF VCCFPGCGKR FAYKHVKDNH 120 EKSGCHVHAH VSFIPG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.1 | 2e-59 | C2H2 family protein |