PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0227351
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 555aa    MW: 63640.4 Da    PI: 9.4973
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0227351genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.65.4e-143611911100
                             HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                      B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                              +   l +p +f++++g++   s  +t++ + g +Wev l  +++ g++++ kGW +F k   L  +D +vF ++g+s+  l v++f
  RcHm_v2.0_Chr7g0227351  36 ARDVKLGIPEDFVSKYGKD--LSNSVTFRLPCGSEWEVGL--TRYNGEVWFDKGWPDFSKFYSLGYNDLLVFGYEGKSR--LQVSIF 116
                             5556799*********977..8889***************..*******************************998554..5***** PP

                             -SS CS
                      B3  98 rks 100
                             +ks
  RcHm_v2.0_Chr7g0227351 117 DKS 119
                             985 PP
2B353.44.7e-17247327687
                             ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             ++++++++++l+lp +f+++h +k+++s  ++l  + g + W+v l+y++k +r+ + +GW eF ++n+Lk+ D++vF+l+++
  RcHm_v2.0_Chr7g0227351 247 IRPSYFNQNLLWLPSEFVRTHLMKQPSS--VILCVPGGsKIWTVALNYQQKARRVSFNTGWIEFLRDNNLKVWDVCVFMLIDE 327
                             678899999************7675565..7777877769***************************************9873 PP
3B340.93.6e-13463552497
                             E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                      B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                             v +++++ + + l+lp  f+  + +k  ++ + +l+ ++g +W v +    ++ r +l++G  +Fv+ n+Lk+gD +vF l+++ +f
  RcHm_v2.0_Chr7g0227351 463 VSIKPSYIRGNYLWLPTLFVHGNLIK--RPSDAILKVSDGARWPVCF--HYNKARATLQGGFAKFVRGNNLKVGDACVFVLTNNIKF 545
                             556788888899********666544..5669***************..55666688***********************9987777 PP

                             ..EEEEE CS
                      B3  91 elvvkvf 97 
                              + v +f
  RcHm_v2.0_Chr7g0227351 546 LFDVFIF 552
                             5555555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    
MTSYLSREFD HRKFGSQPTF RSTTPHFLSI ILDDTARDVK LGIPEDFVSK YGKDLSNSVT  60
FRLPCGSEWE VGLTRYNGEV WFDKGWPDFS KFYSLGYNDL LVFGYEGKSR LQVSIFDKST  120
IEIEYPVKAP NIEESDEHDD SSVEILDDFP LYLRKAGETS RLPSPLLRMK NRTVSSGTAK  180
INLSFEKSMK KKQTHGSKSG RKRKDHFPVK KEWGSTSSTK RFQKQTPEVH SKANVFKSHN  240
CPFRMVIRPS YFNQNLLWLP SEFVRTHLMK QPSSVILCVP GGSKIWTVAL NYQQKARRVS  300
FNTGWIEFLR DNNLKVWDVC VFMLIDEIRL LFEVVTEAAN CTMSSDTDDE EDNEDNVTEL  360
DDADDDEEAD DDSIEILDHF PSFTKGKEKF ALPSQLHKRR RTTSSTKAES TMKHVGGCSK  420
TQKFLKQRPE VSKRIHPVMA SIGRHLAFQR ATAFKPPHPH FAVSIKPSYI RGNYLWLPTL  480
FVHGNLIKRP SDAILKVSDG ARWPVCFHYN KARATLQGGF AKFVRGNNLK VGDACVFVLT  540
NNIKFLFDVF IFRTT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190204KKKQTHGSKSGRKRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-31B3 family protein