PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0223361

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 457aa MW: 50410.7 Da PI: 8.9402

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0223361	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.1	2.5e-30	163	222	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ RcHm_v2.0_Chr7g0223361 163 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 222 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence
MEMSRMKEEN KVLRKVVEQT MKDYYDLQMK FTAVHQNSQT KDPQTFLSLR GNDHDEADPP 60 KSSIPKMSEI RRHRSPSPAR ADDIIKESQL GLSLRLQTNE FRDQREDHDI QERNKEELTS 120 SSLTSSVQHK LQRTDLAGIT SHAAQANRKA RVSVRARCES ATMNDGCQWR KYGQKIAKGN 180 PCPRAYYRCT VAPGCPVRKQ VQRCLEDMSI LITTYEGTHN HPLPVGATAM ASTASAAAAS 240 FMLLDSSNHH LSDGTLPSSN FMTQASLPPN NYYNTPHHML NNHYPSSISH QYSSSSNFRT 300 LNSVHHQPHH DPSKGIVLDL TNNFSDTSTS TAIASAGSSS HSSAPLGFNN WMGGKPANYH 360 HNAGNSTMIM GNHHLLSNSR RTSGEESMTS SSALMAENVS AIASDPKFRV AVAAAITSLI 420 NSKENNTTHH PTPPHNNNNN NNNNNFGPRD NGEKGGS

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence

MEMSRMKEEN KVLRKVVEQT MKDYYDLQMK FTAVHQNSQT KDPQTFLSLR GNDHDEADPP  60
KSSIPKMSEI RRHRSPSPAR ADDIIKESQL GLSLRLQTNE FRDQREDHDI QERNKEELTS  120
SSLTSSVQHK LQRTDLAGIT SHAAQANRKA RVSVRARCES ATMNDGCQWR KYGQKIAKGN  180
PCPRAYYRCT VAPGCPVRKQ VQRCLEDMSI LITTYEGTHN HPLPVGATAM ASTASAAAAS  240
FMLLDSSNHH LSDGTLPSSN FMTQASLPPN NYYNTPHHML NNHYPSSISH QYSSSSNFRT  300
LNSVHHQPHH DPSKGIVLDL TNNFSDTSTS TAIASAGSSS HSSAPLGFNN WMGGKPANYH  360
HNAGNSTMIM GNHHLLSNSR RTSGEESMTS SSALMAENVS AIASDPKFRV AVAAAITSLI  420
NSKENNTTHH PTPPHNNNNN NNNNNFGPRD NGEKGGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	1e-70	WRKY family protein