PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0222511 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 180aa MW: 21244.7 Da PI: 10.8304 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.7 | 1.3e-17 | 11 | 50 | 3 | 42 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i n+s r +tf kR++g+lKK E+ +LCd+++avii+s+ RcHm_v2.0_Chr7g0222511 11 IANESSRRTTFRKRKKGLLKKVGEITTLCDIKAAVIIYSP 50 89*************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence |
MARRKVRLHY IANESSRRTT FRKRKKGLLK KVGEITTLCD IKAAVIIYSP FDGKPKVFPS 60 HPEVHEVLTK FRDMSQKDKT RKMVDQETFL RQRIDKVREQ IRKLKRDNRE KEITQVMLGC 120 LKGRTLSDLE RKDLQDLNFI IERNLRELEI KQWAVDEHNA ELNARGKPRE PREPAQPGAS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RRKVRLHYIANESSRRTTFRKRK |
2 | 22 | 26 | RKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-38 | M-type_MADS family protein |