PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0219961
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 341aa    MW: 37946 Da    PI: 7.454
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0219961genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding543.9e-1779124147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg W + Ed +l+++v+q+G+ +W++Ia+++  gR++k+c++rw++ 
  RcHm_v2.0_Chr7g0219961  79 RGHWRPAEDSKLKELVAQFGPQNWNLIAEHLD-GRSGKSCRLRWFNQ 124
                             899*****************************.***********996 PP
2Myb_DNA-binding56.85.2e-18131174146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             r+++++eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ 
  RcHm_v2.0_Chr7g0219961 131 RMAFSEEEEERLLSAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 174
                             789*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    
MGPQQHHQMR TDSSYRPDLN FFPSQLCLSK TTFGVVANSE MGYGVHDRKS ALSLNLVGDE  60
SDHDVVIQSA AGETKLCVRG HWRPAEDSKL KELVAQFGPQ NWNLIAEHLD GRSGKSCRLR  120
WFNQLDPRIN RMAFSEEEEE RLLSAHRLYG NKWAMIARLF PGRTDNAVKN HWHVIMARIH  180
REQSNVYKRR KPSSNSQAVI IPQHDHDHGQ EDGAKNNASS DRSTISINTS NDESGSAASA  240
STCTNLSLTP SNRPLLPSFF KNINPFQQHK TFGSQMVAGA GRIEGNENGQ LSDSNSETSG  300
DESVLTTYRT NSNNVSSMSR EAQSDKISVM PFIDFLGVGS T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-71MYB family protein