PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0219771
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 675aa    MW: 75041.5 Da    PI: 6.4269
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0219771genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.62.1e-22126226198
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f+k+lt sd++++g +++ +++a+++       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD +
  RcHm_v2.0_Chr7g0219771 126 FCKTLTASDTSTHGGFSVLRRHADDClppldmsQQP--PWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAF 210
                             99****************************964333..4459********************************************* PP

                             EEEE-SSSEE..EEEEE- CS
                      B3  81 vFkldgrsefelvvkvfr 98 
                             +F   + +++el+v+v+r
  RcHm_v2.0_Chr7g0219771 211 IFL--RGETGELRVGVRR 226
                             ***..449999*****97 PP
2Auxin_resp108.57e-36252334183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             a+ha++t++ F+v+Y+Pr+s+seF v+v+k+++a ++k+svGmRfkm+fe+e+++err+sGt+vgv d  +  W nS+WrsLk
  RcHm_v2.0_Chr7g0219771 252 ASHAIATGTLFSVFYKPRTSRSEFLVSVNKYLEARSHKLSVGMRFKMRFEGEEVPERRFSGTIVGVGDNTSPGWANSEWRSLK 334
                             789******************************************************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    
MALSASNHPS GVSRPGTSDA LFKELWHACA GPLVTLPREG ERVYYFPQGH MEQLEASMHQ  60
MSEQQMPSFN LPSKILCKVV NVQLRAEPET DEVYAQVTLL PETDQSEVTS PDPPLPEIPR  120
CTVHSFCKTL TASDTSTHGG FSVLRRHADD CLPPLDMSQQ PPWQELVATD LHGNEWHFRH  180
IFRGQPRRHL LTTGWSVFVS SKKLVAGDAF IFLRGETGEL RVGVRRLMRQ PSNMPSSVIS  240
SHSMHLGVLA TASHAIATGT LFSVFYKPRT SRSEFLVSVN KYLEARSHKL SVGMRFKMRF  300
EGEEVPERRF SGTIVGVGDN TSPGWANSEW RSLKVQWDEP SSILRPDRVS PWELEPLVAT  360
TPLNSQPALR NKRARPPVLP SSSPDLSALG EWKSQVESPS AFSYNDPQRG RDLYPSPKYS  420
SASKANSLCF KGNNSLAAVS ANPMFWSNRV EAVTESLSPV MRDSVERRQS TGNGYRLFGI  480
QLLDNSNVEE TSPMVASGKL GDVQPISSFD AESDQHSEPS NVNRSDLPSG SCDAEKSSLR  540
SPQELQSRQI RSCTKVHMQG IAVGRAVDLA RFEGYEDLLK KLEYMFDIEG ELSGSTKKWQ  600
VVYTDDEDDM MMVGDDPWHE FCSMVRKIFI YTVEEVKRLS PKIKLPVGGE AKQGKPDSEA  660
AINAEDGSSI MGTAY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.40.0ARF family protein