PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0219321

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

CAMTA

Protein Properties

Length: 992aa MW: 110869 Da PI: 8.4107

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0219321	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	176.9	2.5e-55	20	135	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 +e ++rwl+++ei++iL n+++++lt +++ rp+ gsl+L++rk +ryfrkDG+ w+kkkdgktv+E+hekLK g+v+vl+cyYah+ RcHm_v2.0_Chr7g0219321 20 QEsQQRWLRPTEICEILRNYQRFQLTPDPPVRPPAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHG 106 4559********************************************************************************* PP CG-1 89 eenptfqrrcywlLeeelekivlvhylev 117 e+n++fqrr+yw+L+++l++ivlvhy+ v RcHm_v2.0_Chr7g0219321 107 EDNENFQRRSYWMLDTHLQHIVLVHYRMV 135 ************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence
MAEMRKYIPN QQLDLVQILQ ESQQRWLRPT EICEILRNYQ RFQLTPDPPV RPPAGSLFLF 60 DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNE NFQRRSYWML 120 DTHLQHIVLV HYRMVEGSKS GVSRLLVDPG SQVGSPQTAS APCSAQANSP APTVQTSFAS 180 SPIKVDWNGQ TLSTEFEDVD SRGDAGASSL AQPIPGSVLN NACLQLPEVG RLSESFRNPS 240 GTWYAGPKDY QSAGSSDWAM NRSTRESSLH DQNLFVEDIK KNFFEELNGS DSITHKLTDA 300 RLDSNRKGKD VTCEDRLTND IDVQAVTTPS QREAQFQGHS DPHTVAFSTA QVEKSSGDGG 360 VRRGEPVELK KLDSFGRWMD KEIGVDCDDS LMASDSGNYW NTLEAENGDR EVSSLSGHMQ 420 LDVDSLGPSL SQEQLFSICD FSPDWSYSGT ETKVLIVGRF LGGKKNFTET KWGCMFGEIE 480 VPAEVLTDNV IRCQTPLHAP GCVPFYVTCR NRLACSEVRE FEYREKPIGI SLNSSREDEL 540 RFQIRLAKLL NLGSERKWLE CSALDCDKCK LKSSIGSIRS NSGSDWMIAY GDSMACKRGQ 600 LTHIDVLIQN LLKDRLFEWL VYKVHEEGKG PHVLDNEGQG VLHLAAALGY EWAMGLIVAA 660 GVSPNFRDAR GRTGLHWASY FGREETVITL LGLGAAPGAV DDPTPAFPGG QTAADLASSR 720 GHKGIAGYLA EADLTSHLSL LTVNEKTMDN VSATIAAEKA IKISEAITSD VTVDDENSLK 780 GSLAAVRKSA HAAALIQATF RARSFRQRQL TQSSIDIPEA SIDLVALGSL KRVQKFSHYE 840 DYLHSAAALK IQRKYRGWKG RKEFLKIRNR IVKLQAHVRG HQVRKNYKKL VWSVGIMEKV 900 ILRWRRKRPG LRGFRVEKAI EDVSSENKRN DDYEFLSVGR KQKFAGVEKA LARVQSMSRH 960 PEAREQYMRL QSKFEKLKMA DGSGAPNKIE GQ

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence

MAEMRKYIPN QQLDLVQILQ ESQQRWLRPT EICEILRNYQ RFQLTPDPPV RPPAGSLFLF  60
DRKALRYFRK DGHRWRKKKD GKTVKEAHEK LKAGSVDVLH CYYAHGEDNE NFQRRSYWML  120
DTHLQHIVLV HYRMVEGSKS GVSRLLVDPG SQVGSPQTAS APCSAQANSP APTVQTSFAS  180
SPIKVDWNGQ TLSTEFEDVD SRGDAGASSL AQPIPGSVLN NACLQLPEVG RLSESFRNPS  240
GTWYAGPKDY QSAGSSDWAM NRSTRESSLH DQNLFVEDIK KNFFEELNGS DSITHKLTDA  300
RLDSNRKGKD VTCEDRLTND IDVQAVTTPS QREAQFQGHS DPHTVAFSTA QVEKSSGDGG  360
VRRGEPVELK KLDSFGRWMD KEIGVDCDDS LMASDSGNYW NTLEAENGDR EVSSLSGHMQ  420
LDVDSLGPSL SQEQLFSICD FSPDWSYSGT ETKVLIVGRF LGGKKNFTET KWGCMFGEIE  480
VPAEVLTDNV IRCQTPLHAP GCVPFYVTCR NRLACSEVRE FEYREKPIGI SLNSSREDEL  540
RFQIRLAKLL NLGSERKWLE CSALDCDKCK LKSSIGSIRS NSGSDWMIAY GDSMACKRGQ  600
LTHIDVLIQN LLKDRLFEWL VYKVHEEGKG PHVLDNEGQG VLHLAAALGY EWAMGLIVAA  660
GVSPNFRDAR GRTGLHWASY FGREETVITL LGLGAAPGAV DDPTPAFPGG QTAADLASSR  720
GHKGIAGYLA EADLTSHLSL LTVNEKTMDN VSATIAAEKA IKISEAITSD VTVDDENSLK  780
GSLAAVRKSA HAAALIQATF RARSFRQRQL TQSSIDIPEA SIDLVALGSL KRVQKFSHYE  840
DYLHSAAALK IQRKYRGWKG RKEFLKIRNR IVKLQAHVRG HQVRKNYKKL VWSVGIMEKV  900
ILRWRRKRPG LRGFRVEKAI EDVSSENKRN DDYEFLSVGR KQKFAGVEKA LARVQSMSRH  960
PEAREQYMRL QSKFEKLKMA DGSGAPNKIE GQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	0.0	CAMTA family protein