PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0219261
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ZF-HD
Protein Properties Length: 382aa    MW: 41757.4 Da    PI: 7.458
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0219261genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer100.21.5e-31134189359
             ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                             +++YkeClkNhAa++Gg+a+DGCgEfmps geegt++al+C+AC+CHRnFHR+e e 
  RcHm_v2.0_Chr7g0219261 134 SIKYKECLKNHAAAMGGTATDGCGEFMPS-GEEGTIEALTCSACNCHRNFHRKEIEG 189
                             689*************************9.999********************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    
MELSSHQEGQ IPISIPIPIP IPINSSYGAG GHGHGHMIHH HHHHEPAAPH THTLTHNNHL  60
ITSSAAAVAA PPPPQNQIPA SINNNGSSIP KTASLDQEEE EEEDEEHVNH VNVAYNNNNN  120
NSGSNNNKKV VNSSIKYKEC LKNHAAAMGG TATDGCGEFM PSGEEGTIEA LTCSACNCHR  180
NFHRKEIEGD HGMSSWDLNS NTRVGTGGRK VLLGHPNGHK NMSILAPDAL GFHTAANPTG  240
GFLPSRTAPH HPHHHPHQMI MSYNNNMAIG GLMGSQLPSE SDEQEQDQIH HHGHGGGVNV  300
ASRAPVQLVK KRFRTKFTQE QKEKMFNFAE KVGWKIQKQE ESVVQNFCHE IGVKRRVLKV  360
WMHNNKHNLA KNKSQPPPST AA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.17e-64ZF-HD family protein