PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0217411

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SBP

Protein Properties

Length: 1075aa MW: 118624 Da PI: 8.3097

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0217411	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.4	2.8e-40	153	230	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe hsk++++lv++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ RcHm_v2.0_Chr7g0217411 153 MCQVDDCKEDLSSAKDYHRRHKVCESHSKSTKALVAKQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 230 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1075 aa Download sequence
MEEVGAQVAA PIYLRQSLSS RFCDAPAAAA MGKKKRDLPY QTPPNYQHPN SQQRFANAGT 60 NSWNPSVWGW DSMRFVAKPL DTEMMGTSNS EPKRKEEAAA GVVKSTAVVE DDDERLQLNL 120 GGGLASVEEP AASRPNKRVR SGSPGNNGGS YPMCQVDDCK EDLSSAKDYH RRHKVCESHS 180 KSTKALVAKQ MQRFCQQCSR FHPLSEFDEG KRSCRRRLAG HNRRRRKTQP EDVTSRLTIP 240 GDGDNKTSGN LDIVNLLAAI TRPQGKNDVR TTNGSSVLDR EQLLQILSKI NSLPLPVDLA 300 AKLPNLGNLN WKASDLLSLD LQNKLNGKTS ASTMDLITVL SATLAAPSSD TLAMLSQKSS 360 QSSDSEKTKL TCSDQVAGPN LQKRPPQEFH SAGGERSSTS YQSPTEDSDC QVQETRVKLP 420 LQLFSSSPED DSPPKLASSR KYFSSDSSNR TEERSPSSSP PVMQTLFPMK SMADTVKSEK 480 LSISKDLNVN LDSSMNGGSN LPFDLFRGPN RGALSSSIQN FPHQAGYTSS SSDHSPSSLN 540 SDPQDRTGRI LFKLFDKDPS QLPGTLRTQV YSWLSNSPSE MESYIRPGCV VLSVYVSMSF 600 AAWEHLEENL VQRVSSLIQS SDSDFWRSGR FLVNTGRQLA SHKDGKIRLC KAWTTFSSPE 660 LISVSPLAVV GGQKTSLSIR GRNLTNLGTK IHCTYMGGYT SREVGTTYHG TAYDEINLGS 720 FQIHDASPGV LGRCFIEVEN GFKGNSFPVI IADATICSEL NLIESEFDGE TKVCSAISED 780 ENHDYGRPRS REEVLHFLNE LGWLFQRKRI SSMFQGSGYS LSRFKFLLTF TVERDCCTLV 840 KTLLDILVNF DGNELSRESL GMLSDVQLLN RAVKRRCRKM IDLLINYSVI SSDKRYIFPP 900 NLAGPGGLTP LHLAASLSNS EDMIDALTND PEEIGLNCWH SLLDGNGQSP YAYAMMRNNY 960 SYNNLVARKL TDRRNSQVTL TIGNEIEQTH MAMALERRTS IQFRQGSRSC AKCAVAATKY 1020 TRRVPGAQGL LQRPFIHSML AIAAVCVCVC LFLRGSPDIG SVAPFKWENL DFGTI

Sequence ? help Back to Top

Protein Sequence Length: 1075 aa Download sequence

MEEVGAQVAA PIYLRQSLSS RFCDAPAAAA MGKKKRDLPY QTPPNYQHPN SQQRFANAGT  60
NSWNPSVWGW DSMRFVAKPL DTEMMGTSNS EPKRKEEAAA GVVKSTAVVE DDDERLQLNL  120
GGGLASVEEP AASRPNKRVR SGSPGNNGGS YPMCQVDDCK EDLSSAKDYH RRHKVCESHS  180
KSTKALVAKQ MQRFCQQCSR FHPLSEFDEG KRSCRRRLAG HNRRRRKTQP EDVTSRLTIP  240
GDGDNKTSGN LDIVNLLAAI TRPQGKNDVR TTNGSSVLDR EQLLQILSKI NSLPLPVDLA  300
AKLPNLGNLN WKASDLLSLD LQNKLNGKTS ASTMDLITVL SATLAAPSSD TLAMLSQKSS  360
QSSDSEKTKL TCSDQVAGPN LQKRPPQEFH SAGGERSSTS YQSPTEDSDC QVQETRVKLP  420
LQLFSSSPED DSPPKLASSR KYFSSDSSNR TEERSPSSSP PVMQTLFPMK SMADTVKSEK  480
LSISKDLNVN LDSSMNGGSN LPFDLFRGPN RGALSSSIQN FPHQAGYTSS SSDHSPSSLN  540
SDPQDRTGRI LFKLFDKDPS QLPGTLRTQV YSWLSNSPSE MESYIRPGCV VLSVYVSMSF  600
AAWEHLEENL VQRVSSLIQS SDSDFWRSGR FLVNTGRQLA SHKDGKIRLC KAWTTFSSPE  660
LISVSPLAVV GGQKTSLSIR GRNLTNLGTK IHCTYMGGYT SREVGTTYHG TAYDEINLGS  720
FQIHDASPGV LGRCFIEVEN GFKGNSFPVI IADATICSEL NLIESEFDGE TKVCSAISED  780
ENHDYGRPRS REEVLHFLNE LGWLFQRKRI SSMFQGSGYS LSRFKFLLTF TVERDCCTLV  840
KTLLDILVNF DGNELSRESL GMLSDVQLLN RAVKRRCRKM IDLLINYSVI SSDKRYIFPP  900
NLAGPGGLTP LHLAASLSNS EDMIDALTND PEEIGLNCWH SLLDGNGQSP YAYAMMRNNY  960
SYNNLVARKL TDRRNSQVTL TIGNEIEQTH MAMALERRTS IQFRQGSRSC AKCAVAATKY  1020
TRRVPGAQGL LQRPFIHSML AIAAVCVCVC LFLRGSPDIG SVAPFKWENL DFGTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	871	876	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein