PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0215411

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Nin-like

Protein Properties

Length: 910aa MW: 101640 Da PI: 6.6524

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0215411	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.9	2.3e-29	591	642	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek i+le+l+kyFs+++kdAAk+Lgvc T+LKriCRq+GIkRWP+Rkik++ RcHm_v2.0_Chr7g0215411 591 AEKAITLEVLRKYFSGSLKDAAKSLGVCSTTLKRICRQHGIKRWPSRKIKKV 642 5899**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence
MEDGVSSPAT MLGAPTDSAM DLDFMDELFL DGCWLETIDG AGFPNQSPLS SGAILDSSFF 60 WPTLGTNGNF STNPFQTSNQ EETHTPLFNE LQEEAPANMQ SPSQNMTDVV RYSGQSGNHI 120 IEGHDFSRGI WIGPIENQVS APSVMERLKR ALVYMKDVMR DKNVLVQVWL PVNRGGRRVL 180 TTNDLLSSLD SSCPRLAKYH DISVNYQFST GEDSKEFVKG LPGRVFSGKV PEWTPDVRLF 240 RSDEYPRVDD AQRYDVRGTL ALPIFEQGSR TCLGVIEVVM TTQKMQYQPE LESVCKALEA 300 VDLQSSKNLN THNLKASDKP YKAALPEIRE VLRSACETHN LPLAQTWVLC IQQGKDGCRH 360 SDDNYVHCVS TVDDACHVTY PYIKGFHEAC SEHHLLKGQG IVGRAFMTNQ PCFSNDITSL 420 AKTEYPLSHH ARMFGLHAAV AIRLRSIHTG STDFVLEFFL PVDCRDPEQH KKMLTSLSFI 480 IQNICRSLRV VTDKELKEET DLPVSEVIVP SDPRPSGISS FAEVQQTDND VSIFPKEKAR 540 KMPSAKSSKL RPQDLNKKEG VDCVGEFSTF GEGSFSSVGA SKTGEKRRTK AEKAITLEVL 600 RKYFSGSLKD AAKSLGVCST TLKRICRQHG IKRWPSRKIK KVGHSLEKLQ RVIDSVQGAS 660 SAFQINSFYT SYPELASPNL SGTSPFSTSK LIDRPRPSDV PPEGGVLSPQ ATASKSPSSS 720 CSQCSSSSQC CSSKTEQHLP TWSIADNDDP IAGDNRVLKR VRSEAELNDL RQGGVDELMQ 780 RSQSHKYLSE QQNLQSFRPP LKYDGQIAEE RDARRVKVAY GDEKTRFRIQ NNWRYEDLGQ 840 EIAKRFGIED MSRFDMKYLD DDSEWILLTC DADLDECLDV CRSSRCSTIK LSLQLSRRHL 900 ERFSGSSGPS

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence

MEDGVSSPAT MLGAPTDSAM DLDFMDELFL DGCWLETIDG AGFPNQSPLS SGAILDSSFF  60
WPTLGTNGNF STNPFQTSNQ EETHTPLFNE LQEEAPANMQ SPSQNMTDVV RYSGQSGNHI  120
IEGHDFSRGI WIGPIENQVS APSVMERLKR ALVYMKDVMR DKNVLVQVWL PVNRGGRRVL  180
TTNDLLSSLD SSCPRLAKYH DISVNYQFST GEDSKEFVKG LPGRVFSGKV PEWTPDVRLF  240
RSDEYPRVDD AQRYDVRGTL ALPIFEQGSR TCLGVIEVVM TTQKMQYQPE LESVCKALEA  300
VDLQSSKNLN THNLKASDKP YKAALPEIRE VLRSACETHN LPLAQTWVLC IQQGKDGCRH  360
SDDNYVHCVS TVDDACHVTY PYIKGFHEAC SEHHLLKGQG IVGRAFMTNQ PCFSNDITSL  420
AKTEYPLSHH ARMFGLHAAV AIRLRSIHTG STDFVLEFFL PVDCRDPEQH KKMLTSLSFI  480
IQNICRSLRV VTDKELKEET DLPVSEVIVP SDPRPSGISS FAEVQQTDND VSIFPKEKAR  540
KMPSAKSSKL RPQDLNKKEG VDCVGEFSTF GEGSFSSVGA SKTGEKRRTK AEKAITLEVL  600
RKYFSGSLKD AAKSLGVCST TLKRICRQHG IKRWPSRKIK KVGHSLEKLQ RVIDSVQGAS  660
SAFQINSFYT SYPELASPNL SGTSPFSTSK LIDRPRPSDV PPEGGVLSPQ ATASKSPSSS  720
CSQCSSSSQC CSSKTEQHLP TWSIADNDDP IAGDNRVLKR VRSEAELNDL RQGGVDELMQ  780
RSQSHKYLSE QQNLQSFRPP LKYDGQIAEE RDARRVKVAY GDEKTRFRIQ NNWRYEDLGQ  840
EIAKRFGIED MSRFDMKYLD DDSEWILLTC DADLDECLDV CRSSRCSTIK LSLQLSRRHL  900
ERFSGSSGPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein