PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0214511

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 279aa MW: 32677 Da PI: 9.498

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0214511	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.9	6.3e-24	27	108	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W +e+++Li++r e+e++++ +k+ k+lWe+vs++m +rgf+r+++qCk+kw+nl ryk ++++ + ++cp+f++l+ RcHm_v2.0_Chr7g0214511 27 QWGPDETRELIAIRGELERDSSVAKRSKALWEAVSSRMTARGFNRTSEQCKCKWKNLLIRYKGKETSDPEI----GRKCPFFEELQ 108 7************************************************************99999985....678****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence
MYGGGGDEDE SMGLGTMRVM VTSPTGQWGP DETRELIAIR GELERDSSVA KRSKALWEAV 60 SSRMTARGFN RTSEQCKCKW KNLLIRYKGK ETSDPEIGRK CPFFEELQAV FTERERNMQR 120 LLLDSEAGTP RSKKRVKKAR SGRSSDELSE DPDEDEDGSN GNIKKMKAER VVMPRAMNAT 180 ANFSSGSSSV TEMLKEFLKQ QQRMEIEWRE MMERRAQERQ LFEQEWRQRM VKVERERLMV 240 EKAWREREEQ RRMRDESRAE RRDALINSIL NKLIDQTNF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	167	KRVKKARSGRSSDELSEDPDEDEDGSNGNIKKMK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	6e-29	Trihelix family protein