PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0212081 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 169aa MW: 19668.8 Da PI: 4.9145 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 56.1 | 4.8e-18 | 9 | 57 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+i+nk + tfskRr+g++ KA EL+ +C+ae+a++ +s+ gk+y + RcHm_v2.0_Chr7g0212081 9 KKINNKAYLKATFSKRRKGLFRKAAELCHMCGAEIAILTVSPGGKFYNF 57 6899*******************************************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence |
MGRRKIEIKK INNKAYLKAT FSKRRKGLFR KAAELCHMCG AEIAILTVSP GGKFYNFGHP 60 YVDSIIARYC GDETSCTLHE NHECVSHEDD DEDLEGGQEK EEGSTDDVDE DEPIHEKSHK 120 FWWDEEEPID PEQREMFSHS LQELRNNAVW VLNDRNRRES YVKDYMGGI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 158 | RNNAVWVLNDRNRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-21 | M-type_MADS family protein |