PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0211691
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 804aa    MW: 89213.9 Da    PI: 5.6038
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0211691genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.14.9e-2191146156
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             +++ +++t++q++e+e+lF+++++p+ ++r++L+  lgL+ rqVk+WFqNrR+++k
  RcHm_v2.0_Chr7g0211691  91 KKRYHRHTAHQIQEMENLFKECPHPDDKQRQKLSLDLGLKPRQVKFWFQNRRTQMK 146
                             688999***********************************************998 PP
2START166.12.5e-522945183206
                             HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT- CS
                   START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetl 76 
                             a + ++elvk+ +a+ep+W+k s  eng+e l  +e+++               ++ea r+++vv+m++ +lv  +ld   +W e +
  RcHm_v2.0_Chr7g0211691 294 AASSLEELVKMCTASEPLWMKNS--ENGMEMLNAEERARMfpwplnfkqnlsdLRTEATRDTAVVIMNSINLVDAFLDAT-KWMELF 377
                             678899*****************..**********999999***************************************.****** PP

                             S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEE CS
                   START  77 a....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSg 151
                             +    ka+t++vis +      g lqlm+aelq+ splvp R+  f+Ry++q +++g+w+ivd  +ds      ++s+ R ++ pSg
  RcHm_v2.0_Chr7g0211691 378 PsivsKAKTVQVISADpsgqakGSLQLMYAELQVVSPLVPtREAHFLRYCQQnEEEGSWAIVDFPIDSFHGSF-QPSFPRYKRWPSG 463
                             *******************************************************************999987.9************ PP

                             EEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                   START 152 iliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                             +li++++ng+s+vtwveh++++++ +h+++ + v sg+a+ga +w+a lqrqce+
  RcHm_v2.0_Chr7g0211691 464 CLIQDMPNGYSRVTWVEHAEVEEKPVHQIFSHYVYSGMAFGAHRWLAVLQRQCER 518
                             *****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 804 aa     Download sequence    
MYGDCQVMST MGGGNVVNSE TLFSSPMQNP NFNFMPFQPF SSILPKEETG LMTRGKEEMM  60
ESGSGSEHAE EKYSGNEQET EEQLQQQPPK KKRYHRHTAH QIQEMENLFK ECPHPDDKQR  120
QKLSLDLGLK PRQVKFWFQN RRTQMKAQQD RADNVMLRAE NDTLKNENYR LQAALRNIIC  180
PNCGGAAMIG DIALDEHQLH LENARLREEL ERVCCLSGYP GGRQIQTMGP AAPLMAASLD  240
LDMNIYSRHF PDPMMSSCTD HHMITMSSLP PEPSHFPEGG LLLDDEKTLA MKLAASSLEE  300
LVKMCTASEP LWMKNSENGM EMLNAEERAR MFPWPLNFKQ NLSDLRTEAT RDTAVVIMNS  360
INLVDAFLDA TKWMELFPSI VSKAKTVQVI SADPSGQAKG SLQLMYAELQ VVSPLVPTRE  420
AHFLRYCQQN EEEGSWAIVD FPIDSFHGSF QPSFPRYKRW PSGCLIQDMP NGYSRVTWVE  480
HAEVEEKPVH QIFSHYVYSG MAFGAHRWLA VLQRQCERVA SLMARNISDL GVIPSPEARR  540
NLMRLAQRMI RTFSVNMSTS GGQAWTALSD SPDDTIRITT RKVSEAGQPN GVILSAVSTT  600
WLPYSHYRVF ELLRDERRRA QLDVLSNGTS LQEVAHIANG SHPGNCISVL RVNVASNSTQ  660
NIELMLQESC TDQSGSLVVY ATMDVNDIQL AMSGEDPSCI PILPLGFAIV PVESTTESTT  720
TTSPSAQDSR NSGCLMTVGL QVVASPNPSA KLNLSTVSAI NNHLCNSVQQ IISALGNTTT  780
TTTDNGNTVG GGGSCSEPTA ASSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0HD-ZIP family protein