PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0209241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | LSD | ||||||||
Protein Properties | Length: 149aa MW: 15493 Da PI: 7.9166 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.2 | 1.3e-13 | 32 | 56 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V RcHm_v2.0_Chr7g0209241 32 CSGCRNLLLYPVGATSVCCAVCNAV 56 ************************9 PP | |||||||
2 | zf-LSD1 | 46.7 | 5e-15 | 71 | 95 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV RcHm_v2.0_Chr7g0209241 71 CGGCHTLLMYIRGATSVQCSCCHTV 95 ************************9 PP | |||||||
3 | zf-LSD1 | 41.8 | 1.7e-13 | 109 | 133 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V RcHm_v2.0_Chr7g0209241 109 CGNCRMLLMYQYGARSVKCAVCNFV 133 ***********************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence |
MPVPLAPYPT PPAPYTPPAT AATNGAQSQL VCSGCRNLLL YPVGATSVCC AVCNAVTAVP 60 PPGTEMAQLV CGGCHTLLMY IRGATSVQCS CCHTVNLALE ANQVAHVNCG NCRMLLMYQY 120 GARSVKCAVC NFVTSVGVST STTEQKFTN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 2e-60 | LSD family protein |