PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0209241
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LSD
Protein Properties Length: 149aa    MW: 15493 Da    PI: 7.9166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0209241genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.21.3e-133256125
                 zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                            C+gCr+lL YP GA+sV+Ca+C++V
  RcHm_v2.0_Chr7g0209241 32 CSGCRNLLLYPVGATSVCCAVCNAV 56
                            ************************9 PP

2zf-LSD146.75e-157195125
                 zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                            CggC+tlL+Y rGA+sV+C++C+tV
  RcHm_v2.0_Chr7g0209241 71 CGGCHTLLMYIRGATSVQCSCCHTV 95
                            ************************9 PP

3zf-LSD141.81.7e-13109133125
                 zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                             Cg+Cr lL+Y +GA+sV+Ca+C++V
  RcHm_v2.0_Chr7g0209241 109 CGNCRMLLMYQYGARSVKCAVCNFV 133
                             ***********************98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    
MPVPLAPYPT PPAPYTPPAT AATNGAQSQL VCSGCRNLLL YPVGATSVCC AVCNAVTAVP  60
PPGTEMAQLV CGGCHTLLMY IRGATSVQCS CCHTVNLALE ANQVAHVNCG NCRMLLMYQY  120
GARSVKCAVC NFVTSVGVST STTEQKFTN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-60LSD family protein