PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0208901
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 308aa    MW: 33288.5 Da    PI: 7.2814
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0208901genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.83.8e-151150342
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                            i ++s r  +f kR+ g+ KK +ELS+LCd+ +++ii++ 
  RcHm_v2.0_Chr7g0208901 11 IGSESARRASFNKRKDGLVKKVSELSTLCDVPACIIIYGR 50
                            678999********************************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MPRARVKLAW IGSESARRAS FNKRKDGLVK KVSELSTLCD VPACIIIYGR GSNQPIVWPD  60
RPRAEEVIRR YLSLPGYVRC KKTLSQESYL KEKVAKMEEK HNKTLRSNTV KDMDDLMRQG  120
QNGKPLYELD INQTYGLLNF VEEKMKEIQN QFAFSEQAGG PSYTSVHNEP ANNLGVPLGT  180
GMEWPYGIFG VGGDGSSSGT DMGFPMLPQC YGNNIGGSSS VNMVPNMIPY NGNIGNFGGD  240
GDGSVGLPQV NYLGNDITGN GSQMGYFGML PQYYGANVIT SNGSIIGWTI GNTNGANSAG  300
EGDAAGLP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.12e-28M-type_MADS family protein