PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0208371
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARR-B
Protein Properties Length: 582aa    MW: 64688.1 Da    PI: 6.5387
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0208371genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.21.6e-27312366156
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                             k +++WtpeLH++Fv+aveqL G ++A+P++ilelmk +gLt+++v+SHLQkYR++
  RcHm_v2.0_Chr7g0208371 312 KMKVDWTPELHKKFVHAVEQL-GVDQAIPSRILELMKTEGLTRHNVASHLQKYRMH 366
                             5689*****************.********************************96 PP
2Myb_DNA-binding43.76.3e-14315364248
                             SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                               WT+e+++++v+av+qlG +   +++I + m  +g+t+ ++ s++qky+
  RcHm_v2.0_Chr7g0208371 315 VDWTPELHKKFVHAVEQLGVDqaIPSRILELMKtEGLTRHNVASHLQKYR 364
                             57***********************************************7 PP
3Response_reg29.53.7e-11201261109
                             EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHH CS
            Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeee 84 
                             vl+ d++ +    +r+ le  +y +v+++ + +eal  +  +   +++ ++ ++ ++   G+++l++     ++lpii+ +     +
  RcHm_v2.0_Chr7g0208371  20 VLLLDEDTSSSAEIRSKLEAMDY-IVTTFCNETEALSAFSSNPesFHVSIVEVNTSKgDWGFQFLENA----KDLPIIMTSNIHCLN 101
                             7999999****************.***************777777************899****9754....4688999988888** PP

                             HHHHHHHTTESEEEESS--HHHHHH CS
            Response_reg  85 dalealkaGakdflsKpfdpeelvk 109
                             ++ +++ +Ga +fl Kp  +++l++
  RcHm_v2.0_Chr7g0208371 102 TMMKCIALGAVEFLRKPLCEDKLRN 126
                             ******************9999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    
MVCTASDLEG WKDFPKGLRV LLLDEDTSSS AEIRSKLEAM DYIVTTFCNE TEALSAFSSN  60
PESFHVSIVE VNTSKGDWGF QFLENAKDLP IIMTSNIHCL NTMMKCIALG AVEFLRKPLC  120
EDKLRNIWQH VVHKAFNAGG KTVSESVKPV KESVVPMLQP KLENEPPKCK ISVVTENASR  180
VLEHDHEQST GSDKYPAPST PQIKQGSRLM DDGDCQDQTN CLSEKESGEH DGESKSVETT  240
CGNANDTLQI SEPQMPEKIV VKQEKDSADV SKSDINLSQP HIIDGTNDTG RATENLSKAS  300
GLNHSYKSGR KKMKVDWTPE LHKKFVHAVE QLGVDQAIPS RILELMKTEG LTRHNVASHL  360
QKYRMHKRHI LPKDEDRRLL HPRDPNQMSY YPHKPIMAFP PYHYNSAVSM PPVYPMWGQP  420
ASHPANIQMW GSPSYPPWQV SESWHWNPSY PGLHADAWGC PVMPQPLQGG YSSYPQIASG  480
VNNTNVVDNG CSMPHNSSKH HPIASGLNNT NVVDNGCSMP HDSSELYPAE EIIDKVVKEA  540
MSKPWLPLPL GLKLPSTEGV LAELSRQGIC NIPPRINGST SR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.31e-140ARR-B family protein