PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0206821
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 60aa    MW: 6632.81 Da    PI: 10.9956
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0206821genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.41.9e-28958251
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            +ien+  rqvtfskRr+g+lKKA+EL +LCdaev vi+fs+tgkl+e+ss
  RcHm_v2.0_Chr7g0206821  9 KIENTNSRQVTFSKRRAGLLKKAQELAILCDAEVVVIVFSNTGKLFEFSS 58
                            69**********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    
MKKKMGRGKI ENTNSRQVTF SKRRAGLLKK AQELAILCDA EVVVIVFSNT GKLFEFSSAG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.13e-27MIKC_MADS family protein