PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0205761 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | Trihelix | ||||||||
Protein Properties | Length: 250aa MW: 28370.9 Da PI: 10.6396 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 53.2 | 7.5e-17 | 14 | 102 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 +Wt++e +aLi + ++++++l+r++lk+++W++v++ + ++++ qC +k+e+l+kry+ +k++++ r +++ s +++++ RcHm_v2.0_Chr7g0205761 14 CWTDDEAQALISVFKDKWSSLGRTNLKANDWDDVAATLaaqfPLVSPSKTAAQCHNKIEKLRKRYRSEKQRASTR-PGRFSPWALYR 99 8*************************************5443334558999**********************98.78888999999 PP trihelix 84 qle 86 +e RcHm_v2.0_Chr7g0205761 100 FME 102 887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence |
MSSPTPRRRF PPLCWTDDEA QALISVFKDK WSSLGRTNLK ANDWDDVAAT LAAQFPLVSP 60 SKTAAQCHNK IEKLRKRYRS EKQRASTRPG RFSPWALYRF MEELEGESGK KPIHTARKGH 120 RNLAPLFNPK MKLKKNESSG FLRKFGGVES SGVGVNDLGG SSGLLRSVRE VDPVEEMVSS 180 IQLLGEKYMK VEKRKMEMAR EIVMMQMDME MKQTQVIMES QQQIVNACVS ALLDSKKKKK 240 RKMKALSTDS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 236 | 242 | KKKKKRK |
2 | 236 | 243 | KKKKKRKM |
3 | 237 | 242 | KKKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44730.1 | 1e-27 | Trihelix family protein |