PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0205651
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Trihelix
Protein Properties Length: 328aa    MW: 36986 Da    PI: 10.0094
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0205651genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.58.3e-1921109186
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                             +Wt++e + Li a+r+++ +lrr++lk ++W++v+++    +     +++ qC++k+e+l+kry+++k+++++   + ss++++f+ 
  RcHm_v2.0_Chr7g0205651  21 CWTQDEARSLILAYRDRWFALRRTNLKSADWDHVAAATaaaAPSSPPKTALQCRHKMEKLRKRYRAEKQRASGYPGRFSSSWALFHL 107
                             8************************************96555555689*************************9999*********9 PP

                trihelix  85 le 86 
                             ++
  RcHm_v2.0_Chr7g0205651 108 MD 109
                             98 PP

Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MSTVVTTTAL PTKPRRVPPP CWTQDEARSL ILAYRDRWFA LRRTNLKSAD WDHVAAATAA  60
AAPSSPPKTA LQCRHKMEKL RKRYRAEKQR ASGYPGRFSS SWALFHLMDE MESGPDPGFD  120
SGGEFGGGFS LKARNLVKFN GNVGRDFSPD VDENSSFYSE GEDYVNQGFG PKSNGKTDVN  180
LKHSFRKHGD YGVDIRSDRD FVPAGFRPKS SGIVDGNAKR NVRFKEFDGY SCLSGSKFVE  240
KSSVVGIKRD MDPVEDLASS IMRLGEGFVR MEKMKMEMTM EIEKMRMEME LKRNEAMIES  300
HQQIVDAFVN ALLERKRKKK AKVESSHA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315319RKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.19e-26Trihelix family protein