PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0205071
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 290aa    MW: 32565.2 Da    PI: 5.3153
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0205071genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.23.2e-2670117249
                             ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 
                             +ien   rqvtfskRr+g++KKA ELSvLCdaevav+++sstgklye 
  RcHm_v2.0_Chr7g0205071  70 KIENLPARQVTFSKRRQGLFKKAGELSVLCDAEVAVVVVSSTGKLYES 117
                             79********************************************95 PP
2K-box46.91.2e-161482321899
                   K-box  18 qqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                             q e++   + +++L     e+R++ G+dLe+L++ eLq+Le+++e +l+++ ++K++ +++qi  l  k  el e+n++Lr++++
  RcHm_v2.0_Chr7g0205071 148 QLEINEWMRLNKELAdkiLELRRMEGQDLEELNIDELQRLENRIEGGLSSVLQTKDKRIMSQILALETKVAELTEANNQLRQRVN 232
                             444444444444444434788************************************************************9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    
MYNRACIIGR PIAATPVSFL GKQFFPFLGV YYFTSISACC QLWRDPKLQF LHHEAIIEQL  60
AAMNKIKIEK IENLPARQVT FSKRRQGLFK KAGELSVLCD AEVAVVVVSS TGKLYESSSS  120
STKDVIARYE LHTEEVEKGD QQPPPELQLE INEWMRLNKE LADKILELRR MEGQDLEELN  180
IDELQRLENR IEGGLSSVLQ TKDKRIMSQI LALETKVAEL TEANNQLRQR VNKLRMLSNG  240
NENRTGGVAL ESEISTDEEE SMASESATGS TGCYSTGYPL SLKLGLSRCG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.17e-55MIKC_MADS family protein