PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0204681
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family RAV
Protein Properties Length: 312aa    MW: 35832.4 Da    PI: 7.5771
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0204681genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP227.39.1e-0951881153
                     AP2 11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                            k g W A+I        +kr++lg++ t+ eAaka+++a+ k+
  RcHm_v2.0_Chr7g0204681 51 KGGMWGARITYN-----YKRYRLGTYETEIEAAKAYDRAAVKM 88
                            345699998772.....4**********99*********9876 PP
2B341.91.8e-13160246185
                             EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                             f+k+l++ dv+ ++ + +  ++a+ h    + ++  +   tl+d + rsW++ ++y+++ +++++t+GW +F +  +Lke+D ++++
  RcHm_v2.0_Chr7g0204681 160 FKKELSHMDVTHKC-FLVQGDYASLHsppiE-DEGWNSFATLYDIHRRSWTFGCSYWQSTQSFIFTSGWGDFLEMYNLKEKDKIIIY 244
                             78899899999888.7779999999999862.33344479*******************************************9999 PP

                             E- CS
                      B3  84 ld 85 
                             + 
  RcHm_v2.0_Chr7g0204681 245 RC 246
                             44 PP
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    
MSMDVSSDST IEMVVQDQNL PPTSPSHQNR CTRSSQQGSS SSKLKGVIPL KGGMWGARIT  60
YNYKRYRLGT YETEIEAAKA YDRAAVKMPR AHSLNFHRSN YSVEESAFQS QYSIEEVLRM  120
LQDKTYSSML QNFILNHSTC VGFHAEAFMK EQEISYDFLF KKELSHMDVT HKCFLVQGDY  180
ASLHSPPIED EGWNSFATLY DIHRRSWTFG CSYWQSTQSF IFTSGWGDFL EMYNLKEKDK  240
IIIYRCRYQG DAVRRKFHLI NVLRSTAESS VVGMTTEQDV GLRGSLNKEL EADCTSEVKK  300
RGFKLFGIEI SG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.12e-34RAV family protein