PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0204271
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HD-ZIP
Protein Properties Length: 319aa    MW: 35742 Da    PI: 8.5138
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0204271genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-19145199256
                             T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                             rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  RcHm_v2.0_Chr7g0204271 145 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTK 199
                             788899***********************************************98 PP
2HD-ZIP_I/II129.51.4e-41145234191
             HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                             +kk+rlsk+q+++LEesF+e+++L+p++K +la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eL
  RcHm_v2.0_Chr7g0204271 145 RKKLRLSKDQSAILEESFKEHNTLNPKQKLALAKQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQEL 231
                             69************************************************************************************* PP

             HD-ZIP_I/II  88 reel 91 
                             r +l
  RcHm_v2.0_Chr7g0204271 232 R-AL 234
                             9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MMVQREDLGL SLSLSAFPHQ NHNPNSNNNN NNNNLQLNLM PSLVPTSSSS PHSGFNPQKP  60
SWNDALASSD RNSDTCRAAP RSFLRGIDVN RLPSTGDCED VSSPNSTVSS VSGKRSEREA  120
NGEDLDLERD GSRGMSDEED GETSRKKLRL SKDQSAILEE SFKEHNTLNP KQKLALAKQL  180
GLRPRQVEVW FQNRRARTKL KQTEVDCEFL KRCCENLTEE NRRLQKEVQE LRALKLSPQF  240
YMQMTPPTTL TMCPSCERVA VPPNSTPPSA TIDPRAHHHH HPMVPVHHPR AIPVAGPWAS  300
AAPIPQQQRP FDAFRAARP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144150SRKKLRL
2194202RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.12e-91HD-ZIP family protein