PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0204181
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 90aa    MW: 9924.9 Da    PI: 9.6078
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0204181genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.73e-281363151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            k+ien+  rqvtfskRr+g+lKKA+EL +LCdaev vi+fs+tgkl+e+ss
  RcHm_v2.0_Chr7g0204181 13 KKIENTNSRQVTFSKRRAGLLKKAQELAILCDAEVVVIVFSNTGKLFEFSS 63
                            78***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    
MKKKMGRGKI EIKKIENTNS RQVTFSKRRA GLLKKAQELA ILCDAEVVVI VFSNTGKLFE  60
FSSAGGCFCF PCFLLGSCKC QSLHCCSIVV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.15e-32MIKC_MADS family protein