PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0202931
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 778aa    MW: 85332.8 Da    PI: 6.3424
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0202931genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS326.65e-1004147772374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                              ++L+++Ae+v +g+++ aqa+Larl+++ sp g+p+qR+a+yf+eAL+  l+ + + +  + pp++ ++ +++ ++ a+k+fsevs
  RcHm_v2.0_Chr7g0202931 414 LDQLYKAAEMVGTGNFSHAQAILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPAT--SPPPRTPTPFDVIFKMGAYKVFSEVS 498
                             679**************************************************955554..57888999999*************** PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelg 173
                             P+++f ++t+Nqa+leav++++++Hi+Dfdi+ G++W++++q+L  R+  + +psl+iT+++sp+++++ el+ ++++L++fA+e+g
  RcHm_v2.0_Chr7g0202931 499 PLIQFVNFTCNQALLEAVSEADQIHIVDFDIGFGAHWASFMQELPLRNrgGASPSLKITAFASPSTHHTVELNLMRDNLTQFADEIG 585
                             *********************************************99976779********************************** PP

                    GRAS 174 vpfefnvlvakrledleleeL...rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerf 257
                             + fe +v+  + l d +  +L   r + +Ea+aVn+ +   +  +++++l++    +L++vk+lsPk+vv  ++ +d+++ +F +++
  RcHm_v2.0_Chr7g0202931 586 LGFELEVVNID-LLDQNSYSLpffRANDNEAIAVNFPI--WSSSNQPAALPN----LLQFVKQLSPKIVVSLDRGCDRSDLPFPQHI 665
                             *******7444.4444455552226666********99..555567888888....******************************* PP

                    GRAS 258 lealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                              +al+ y  l++sl+a    +s++ +k+Er+ll+++i++ v  + +       ++  W+  + +aGF+p+++s+++++qa++++++ 
  RcHm_v2.0_Chr7g0202931 666 RQALQSYINLLESLDAV-NVTSDAVNKIERFLLQPKIESTVLGRLRT----PDKMPLWKTLFASAGFTPLSFSNFTETQAECVVKRS 747
                             **************665.579********************998887....9999******************************** PP

                    GRAS 345 ksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                               +g++ve++++slvl+W++r+L+s+SaWr
  RcHm_v2.0_Chr7g0202931 748 TARGFHVEKRQESLVLCWQRRELISASAWR 777
                             *****************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    
MPFQFQQQGK GVLEITAASI CDWNHKKDEE LFFNNSFVSN EPTSVLHMRR SPSPPTSAST  60
LSSSFNGGGN GNGTTPLLQD TSPVGPEPDT AAARSSSKDE WTCELQSIPS GGLEAVTGSG  120
GGRCGGLGLE DWETVLSETA ASPGQDQSLL RWISGDVDDA SFGLKQLLQS GNNSNCLEFD  180
GNAGLGMVDQ GSGFDHIGSS VSGPNLGFSG GSGFNGKMGF VPSSSAPLNY KVSNVGLMNN  240
NGGNNNNFAN SALPVSLPHG MVYQNHQQFE NPDEKPQILN PQMFMNQHQS QLPHQNPNFF  300
MPVTYAQQEQ HFLQSQPKRH NPGGGGGGLD PSSQIHQKVQ YSDPGHEFLL RKQHLQQQQQ  360
QPHFGNFPPG MQFLPQQHHT QPRPVVVPKQ KVGGEEMAAA AHQNQQQLLQ HSLLDQLYKA  420
AEMVGTGNFS HAQAILARLN HQLSPVGKPL QRAAFYFKEA LQLLLLMNNP ATSPPPRTPT  480
PFDVIFKMGA YKVFSEVSPL IQFVNFTCNQ ALLEAVSEAD QIHIVDFDIG FGAHWASFMQ  540
ELPLRNRGGA SPSLKITAFA SPSTHHTVEL NLMRDNLTQF ADEIGLGFEL EVVNIDLLDQ  600
NSYSLPFFRA NDNEAIAVNF PIWSSSNQPA ALPNLLQFVK QLSPKIVVSL DRGCDRSDLP  660
FPQHIRQALQ SYINLLESLD AVNVTSDAVN KIERFLLQPK IESTVLGRLR TPDKMPLWKT  720
LFASAGFTPL SFSNFTETQA ECVVKRSTAR GFHVEKRQES LVLCWQRREL ISASAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-115GRAS family protein