PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr7g0202671

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WRKY

Protein Properties

Length: 292aa MW: 32730.2 Da PI: 9.7126

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr7g0202671	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.2	1.1e-30	235	291	3	58
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 D y+WrKYGqK++kgs++prsYY+C+s gCp++k+ver+ ed +++++tYeg+H+h RcHm_v2.0_Chr7g0202671 235 DDYSWRKYGQKPIKGSPYPRSYYKCSSVrGCPARKHVERCLEDSTMLVVTYEGDHQH 291 99**********************988*************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence
MNPGLDFKLH EVAKTSLQHA HHLVACMSDN NQERSVQEVS LVAQDAVKEF RKLLSLLDGS 60 MSSNHKRIRK GPLPKSGDIN QDEMMDSSPN CSSSHIKTHD RDHQPCLVTH FFSSLQRDQA 120 IANYDQSSVV LPSNIVMGLN QFSQKPSRTS VISMDGSSIN TQIVRHSMSE LLTSRDGTSM 180 FSSKRKSCGV KSEEAGTVCL ASTGKCHCSK RRKLRIKRRI RVPAVSNRLA DIPPDDYSWR 240 KYGQKPIKGS PYPRSYYKCS SVRGCPARKH VERCLEDSTM LVVTYEGDHQ HA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	215	221	RIKRRIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	8e-50	WRKY family protein