PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RcHm_v2.0_Chr7g0199781 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25852.3 Da PI: 5.5789 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.3 | 5.4e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss RcHm_v2.0_Chr7g0199781 9 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSTRGKLYEFSS 59 79***********************************************96 PP | |||||||
2 | K-box | 70.1 | 6.8e-24 | 80 | 174 | 5 | 98 |
K-box 5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 sgk+ +++ ++e +++ + + k+ie +++++R+llG++Les+s+ eLqq+e+qLe+sl kiR++Kn +l+eqie +++ ek+l ++ RcHm_v2.0_Chr7g0199781 80 SGKAvQDHDHMELANEDTSSMAKRIEFIESSKRKLLGDGLESCSIDELQQIENQLERSLAKIRDRKNLMLREQIELMKEEEKSLLKQ 166 5666345556666778899******************************************************************** PP K-box 91 nkaLrkkl 98 n +Lr+k RcHm_v2.0_Chr7g0199781 167 NVELREKC 174 *****985 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 226 aa Download sequence |
MVRGKTQMKR IENAASRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFST RGKLYEFSSC 60 SSLNNTIDRF QKRVKDQGLS GKAVQDHDHM ELANEDTSSM AKRIEFIESS KRKLLGDGLE 120 SCSIDELQQI ENQLERSLAK IRDRKNLMLR EQIELMKEEE KSLLKQNVEL REKCGMQPIG 180 PPNNRGGGEE DEEDDVETES ETETMEVETE LFIGPPKRQR SSKKIP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G22950.1 | 2e-66 | MIKC_MADS family protein |