PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0199561
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family TCP
Protein Properties Length: 393aa    MW: 40894.4 Da    PI: 6.8975
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0199561genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.95.2e-361042101102
                     TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssa 82 
                             aag++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++      +       
  RcHm_v2.0_Chr7g0199561 104 AAGRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtLKI------ 184
                             689**************************************************************7777744422211111...... PP

                     TCP  83 snsssg...........kaaksaakskksqk 102
                                  +           ++a++a+k+k++++
  RcHm_v2.0_Chr7g0199561 185 -----PttpsyhnptddSQASAAKKRKRPSN 210
                             .....11111112222122222222222222 PP

Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    
MTSYFEDQED DGGGGGSDHS TSTGDPEDSR NSEDNRNRVL SRQLANFDET AMPLKMEPID  60
SDPPSDSDHR AHPQPPQAPS VGIVPMAAMQ MQMPVPVSSS SAAAAGRRSS TKDRHTKVEG  120
RGRRIRIPAT CAARIFQLTR ELGHKSDGET VRWLLEHAEQ AIIEATGTGT VPAIAVSVGG  180
TLKIPTTPSY HNPTDDSQAS AAKKRKRPSN SEFVDLSDAV SQSSGLAPVG PSTPQPVPQG  240
LVPVWAVGNA GMMVPANAFW MIPPNGSGQV VSPAAGPSSQ APQIWALSPT MTPVFNVAAA  300
RPISTTFVGN GGVEVRAPSP ALSNSAVSTS TVGSKAAKKS SSTMAPSVSS SGSGNSNNGS  360
GTKAQMLRDF TLEIYDKQEL QFMGRPAAGP GSQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.15e-66TCP family protein