PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RcHm_v2.0_Chr7g0199561 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
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Family | TCP | ||||||||
Protein Properties | Length: 393aa MW: 40894.4 Da PI: 6.8975 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.9 | 5.2e-36 | 104 | 210 | 1 | 102 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssa 82 aag++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLl+ a++ai+e+tgt++ +a ++ + RcHm_v2.0_Chr7g0199561 104 AAGRRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLEHAEQAIIEATGTGTVPAIAVsvggtLKI------ 184 689**************************************************************7777744422211111...... PP TCP 83 snsssg...........kaaksaakskksqk 102 + ++a++a+k+k++++ RcHm_v2.0_Chr7g0199561 185 -----PttpsyhnptddSQASAAKKRKRPSN 210 .....11111112222122222222222222 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 393 aa Download sequence |
MTSYFEDQED DGGGGGSDHS TSTGDPEDSR NSEDNRNRVL SRQLANFDET AMPLKMEPID 60 SDPPSDSDHR AHPQPPQAPS VGIVPMAAMQ MQMPVPVSSS SAAAAGRRSS TKDRHTKVEG 120 RGRRIRIPAT CAARIFQLTR ELGHKSDGET VRWLLEHAEQ AIIEATGTGT VPAIAVSVGG 180 TLKIPTTPSY HNPTDDSQAS AAKKRKRPSN SEFVDLSDAV SQSSGLAPVG PSTPQPVPQG 240 LVPVWAVGNA GMMVPANAFW MIPPNGSGQV VSPAAGPSSQ APQIWALSPT MTPVFNVAAA 300 RPISTTFVGN GGVEVRAPSP ALSNSAVSTS TVGSKAAKKS SSTMAPSVSS SGSGNSNNGS 360 GTKAQMLRDF TLEIYDKQEL QFMGRPAAGP GSQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 5e-66 | TCP family protein |