PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr7g0199131
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 660aa    MW: 72804.6 Da    PI: 5.5542
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr7g0199131genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS405.45.4e-1242756442374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                              +lL +c+ea+ ++d +++++++a+l elasp+g+++ Rl+ay+teALa r++r +++++++ pp+e + +  +e+ +al+l+++vs
  RcHm_v2.0_Chr7g0199131 275 LSLLNACVEAIGTKDIAAINHFIAKLGELASPKGSNISRLTAYYTEALALRVTRLWPHVFQISPPREFD-RGDDESGTALRLLNQVS 360
                             689****************************************************************98.5678888999******* PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175
                             Pi+kf h+t N+ +l+a+eg++rvH+iDfdi+qGlQWp+L+q+LasR+++p ++RiTgvg+    sk+el+etg+rLa fA +l++p
  RcHm_v2.0_Chr7g0199131 361 PIPKFLHFTSNEILLRAFEGKDRVHVIDFDIKQGLQWPSLFQSLASRTNPPSHVRITGVGE----SKQELNETGDRLAGFAGALNLP 443
                             *************************************************************....********************** PP

                    GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                             fef++ v++rled++l++L+vk++E++aVn+++qlh++l + +  +   +++L l++s++P vv  +eqea+hn++++ +r++++l+
  RcHm_v2.0_Chr7g0199131 444 FEFHP-VVDRLEDVRLWMLHVKEQECVAVNCAFQLHKTLYDATGGA--LRDFLGLIRSTNPAVVLKAEQEAEHNEPRLEARVSNSLR 527
                             *****.7*******************************96554444..589************************************ PP

                    GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
                             yysa+fd + ++lp +s +rikvE   ++rei+n+vaceg++r+erhe +ekWr+ +e+ G++   +++++  q + ll++++ + y
  RcHm_v2.0_Chr7g0199131 528 YYSAIFDLIGSSLPLDSPARIKVEDT-VAREIRNIVACEGSDRVERHEGFEKWRMLMEQGGYRCNGITDREFLQSQFLLKMYECENY 613
                             *************************9.9*******************************************************999* PP

                    GRAS 350 rveee......sgslvlgWkdrpLvsvSaWr 374
                             +v+++       ++l+l W+d+pL++vSaW+
  RcHm_v2.0_Chr7g0199131 614 SVKKQghenegAAALTLSWMDQPLYTVSAWT 644
                             ***6655555567788**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    
MLAGCSSSTL LSPRHRLRSE AAAQLQACHF QLPSMSTQRL DLPCSFPRKD SSRSQPIRPV  60
GLSVEKSSID SKTGTRSLKQ SIRLPPLATS RPAATIQAEV KDQFWEKRGK GLKRFAEVED  120
EKEEDESCRN RAKRKRCSSE NGEGGENGLS LGELGGGNFW FQPGFHVPRS VQAITGIDPP  180
QFPYTFPNNP WLQSVVTEIT DLKEGATSHG PVGEASGNSS TSSGSQSLGL RVNESVSEPE  240
GGVGSGNGYN PYGDAGVEAE DEEESEVEHQ GFELLSLLNA CVEAIGTKDI AAINHFIAKL  300
GELASPKGSN ISRLTAYYTE ALALRVTRLW PHVFQISPPR EFDRGDDESG TALRLLNQVS  360
PIPKFLHFTS NEILLRAFEG KDRVHVIDFD IKQGLQWPSL FQSLASRTNP PSHVRITGVG  420
ESKQELNETG DRLAGFAGAL NLPFEFHPVV DRLEDVRLWM LHVKEQECVA VNCAFQLHKT  480
LYDATGGALR DFLGLIRSTN PAVVLKAEQE AEHNEPRLEA RVSNSLRYYS AIFDLIGSSL  540
PLDSPARIKV EDTVAREIRN IVACEGSDRV ERHEGFEKWR MLMEQGGYRC NGITDREFLQ  600
SQFLLKMYEC ENYSVKKQGH ENEGAAALTL SWMDQPLYTV SAWTPIDVAG GSSPSFSQPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein